Factsheet for VIT_14s0171g00280.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0783g00010.t01
VIT_00s0961g00020.t01
VIT_05s0094g01650.t01
VIT_06s0061g01170.t01
VIT_08s0056g00040.t01
VIT_09s0002g06730.t01
VIT_11s0052g00920.t01
VIT_13s0067g00550.t01
VIT_14s0171g00280.t01
VIT_16s0098g00850.t01
VIT_18s0122g01080.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01780.1	VIT_09s0002g06730.t01	AT1G15370.1	24529374
AT3G01780.1	VIT_18s0122g01080.t01	AT1G20760.1	24529374
AT3G01780.1	VIT_13s0067g00550.t01	AT2G40060.1	21187379
AT3G01780.1	VIT_14s0171g00280.t01	AT3G01780.1	21187379
AT3G01780.1	VIT_00s0783g00010.t01	AT3G50590.1	24529374
AT3G01780.1	VIT_00s0961g00020.t01	AT3G50590.1	24529374
AT3G01780.1	VIT_06s0061g01170.t01	AT5G22770.1	24529374
AT3G01780.1	VIT_05s0094g01650.t01	AT5G24710.1	24529374
AT3G01780.1	VIT_08s0056g00040.t01	AT5G24710.1	24529374
AT3G01780.1	VIT_16s0098g00850.t01	AT5G54160.1	24529374
AT3G01780.1	VIT_11s0052g00920.t01	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94459	Soybean	endoplasmic reticulum, nucleus	85.33	86.65
Solyc11g068640.1.1	Tomato	nucleus	85.33	86.65
KRH06999	Soybean	endoplasmic reticulum	84.73	85.82
GSMUA_Achr10P...	Banana	cytosol	78.03	82.07
GSMUA_Achr6P17830_001	Banana	cytosol	77.86	81.96
AT3G01780.1	Thale cress	cytosol	81.51	81.72
Bra022067.1-P	Field mustard	nucleus	81.09	80.27
Zm00001d004785_P001	Maize	mitochondrion	52.16	79.87
Os11t0175900-01	Rice	nucleus, plasma membrane	52.42	79.54
HORVU4Hr1G019290.1	Barley	cytosol	59.71	78.48
EES09396	Sorghum	cytosol	71.67	73.22
TraesCS4B01G094200.1	Wheat	unclear	71.42	72.96
TraesCS4D01G091000.1	Wheat	golgi	71.42	72.96
TraesCS4A01G222200.1	Wheat	cytosol	71.08	72.68
Os02t0793100-01	Rice	plasma membrane	70.82	72.36
Zm00001d053028_P001	Maize	mitochondrion	65.56	66.87
Zm00001d004784_P001	Maize	cytosol	18.74	57.85
CDX91928	Canola	cytosol	1.53	38.3

Protein Annotations

EntrezGene:100260972	wikigene:100260972	MapMan:22.1.4.1	InterPro:ARM-type_fold	ProteinID:CCB62226	ProteinID:CCB62226.1
ncoils:Coil	UniProt:F6I5K8	EMBL:FN596749	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0005886	GO:GO:0006810	GO:GO:0006897	GO:GO:0007275	GO:GO:0008150	GO:GO:0009504
GO:GO:0009506	GO:GO:0009524	GO:GO:0009555	GO:GO:0016020	GO:GO:0042802	EntrezGene:LOC100260972
wikigene:LOC100260972	PANTHER:PTHR36029	SUPFAM:SSF48371	TIGR:TC66060	InterPro:TPLATE	UniParc:UPI0001984CA0
ArrayExpress:VIT_14s0171g00280	EnsemblPlantsGene:VIT_14s0171g00280	EnsemblPlants:VIT_14s0171g00280.t01	unigene:Vvi.3494	RefSeq:XP_002263932	RefSeq:XP_002263932.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:-:26113093..26121247

Molecular Weight (calculated)

130970.0 Da

IEP (calculated)

5.870

GRAVY (calculated)

-0.160

Length

1179 amino acids

Sequence
(BLAST)

0001: MDILFAQIQA DLRSNDALRQ TNALLQALQQ CAAGRDVSLL AKSAVEEIVA SPASAVCKKL AFGLIRATRL TADLWEIVCT GIRTDLDFPD PDVTAAAVSI
0101: LASIPSYRLG KLISDCNKEI SNCFDSPSDN LRLSITETLG CILARDDLVT LCENNVNLLD RVSNWWTRIG QNMLDRADSV SKVAFESVGR LFKEFDSKRM
0201: SRLAGDKLVD SENSLAIRSN WVSSMVDFAW KKRNALMARS LVLPVESFKA TVFPIVYAVK AVASGAVEVI RKLSRSSRGA NDVVDSGNAE RFVGVSDVVT
0301: HLVPFLESSL DPALIFEVGI NMLSLADVPG GKPEWASASI IAILTLWDRQ EYSSARESIV RAVVTNLHLL DLHMQVSLFK RLLLMVRNLR AESDRMHALA
0401: CICRTALCVD LFAKESVRRG QKPLAGTDIA SLFEDARIKD DLHSVTSKSL FREELVASLV ESCFQLSLPL PEQKNSGTES RVIGALAYGT GYGALNWTEP
0501: ALEVVEVCRP CVKWDCEGRI YAIDCYLKLL VRLCHIYDTR GGVKRVKDGA SQDQILNETR LQNLQRELVK DLREVNNPRI CARLIWAIGE HIDLEGLDPL
0601: LADDPEDPLN IIVSNVHKVL FNMDSSVTTA NRLQDIQAIL LCAQRLGSRH PRAGQLLTKE LEEFRSNSLA DSVNKHQCRL ILQRIKYVTG HPESRWAGVS
0701: ETRGDYPFSH HKLTVQFYEA SAAQDRKLEG LVHKAILELW RPDPSELTLL LTKGIDSTLL KVPPSAITLT GSSDPCYVEA YHLTDASDGR ITLHLKVLNL
0801: TELELNRVDI RVGLSGALYF MDGSPQAVRQ LRNLVSQDPV LCSVTVGVSH FERCALWVQV LYYPFYGSGV AGDYEGDYTE DDAQIMRQKR SLRPELGEPV
0901: ILRCQPYKIP LTELLLPHKI SPVEYFRLWP SLPAIVEYTG AYTYEGSGFT ATAAQQYGAS PFLSGLKSLS SKPFHKVCSH ILRTVAGFQL CFAAKTWYGG
1001: FVGMMIFGAS EVSRNVDLGD ETTTMMCKFV IRASDASITK EIGSDLQGWL DDLTDGGVEY MPEEEVKVAA VERLRISMER IALLKAAQPP PKPPKSDDEE
1101: EEEEGEEEEE VEGEGEDKKK KKKKKKKEKE KENGEEDGKT KGPSTLSKLT AEEVEHRALQ AAVLQEWHML CKARGTKVN

Best Arabidopsis Sequence Match ( AT3G01780.1 )
(BLAST)

0001: MDILFAQIQA DLRSNDALRQ SSALLQALQQ SAAGRDISVI AKSAVEEIVA SPASAVCKKL AFDLIRSTRL TPDLWDTVCS GVKTDLHFPD PDVTAAAVSI
0101: LAALPAFSLP KLISDCSSEI ASCFDSPSDN LRFSITETLG CILARDDLVT LCENNVGLLD KVSNWWARIG QNMLDKSDAV SKVAFESVGR LFQEFDSKRM
0201: SRLAGDKLVD SENSLAIRSK WVSSMVDIVW RKRSALMARS LVLPVETFRA TVFPLVFAVK AVASGSVEVI RQLSKASSAA AAANATVVDS NAEKLVGVSD
0301: LVTHLAPFLA SSLDPALIFE VGINMLYLAD VAGGKPEWAS QSIIAILTLW DRQEFSSARE SIVRAVVTNL HLLDLHMQVS LFRRLLLMVR NLRAESDRMH
0401: ALACICRTAL CVHLFARESA RRGQKPLPGT DIISLFEDAR IKDDLNSVTS KSLFREELVA MLVESCFQLS LPLPEQKNSG MESRVIGALA YGTGYGALNW
0501: TEPALEVVEV CRPCVKWDCD GRTYAVDCYL KLLVRLCHIY DTRGGVKRLK DGASQDQILN ETRLQNLQRE LVKDLQEVNT PRILGRLIWT IAEHIDLEGL
0601: DPLLADDPDD PLNIIIANIH KVLFNLDAAA TTSNRLQDVQ AVLLCAQRMG SRHARAGQLL TKELEEYRNH AAADTVSKHQ TRLILQRIKY VSNLPERKWA
0701: GVSETRGDYP FSHHKLTVQF YEPSAAQDRK LEGLIHKAIL ELWRPKPTEL TLFLTKGVDS TSIKVPPTAY PLTGSSDPCY IEAYHLADTN DGRVTLHLKI
0801: INLTELELNR VDIRVGLSGA LYFMDGSPQA VRQLRNLVSQ DPVQCSVTVG VSQFERCGFW VQVLYYPFRG ARGEYDGDYI EEDPQIMKQK RGSKAELGEP
0901: VILRCQPYKI PLTELLLPHK ISPVEFFRLW PSLPAVAEYT GTYMYEGSGF MATAAQQYGA SPFLSGLKSL SSKPFHRVCS HIIRTVAGFQ LCYAAKTWHG
1001: GFVGMMIFGA SEVSRNMDLG DETTTMMCKF VVRASEASIT KQIESDIQGW CDDLTDGGVE YMPEDEVKAT AAEKLKISME RIALLKAAQP KKTSKIEEES
1101: ENEEEEEGEE EDDDEEVKEK KEKEEGKDKE EKKKKEKEKG TFSKLTAEET EHMALQAAVL QEWHILCKDR KYTKVN

Arabidopsis Description

TPLATEProtein TPLATE [Source:UniProtKB/Swiss-Prot;Acc:F4J8D3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.