Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0171g00280.t01 | Wine grape | cytosol, nucleus, plastid | 86.65 | 85.33 |
| KRG94459 | Soybean | endoplasmic reticulum, nucleus | 84.5 | 84.5 |
| KRH06999 | Soybean | endoplasmic reticulum | 83.98 | 83.76 |
| AT3G01780.1 | Thale cress | cytosol | 82.34 | 81.29 |
| Bra022067.1-P | Field mustard | nucleus | 81.65 | 79.6 |
| Zm00001d004785_P001 | Maize | mitochondrion | 52.54 | 79.22 |
| GSMUA_Achr10P... | Banana | cytosol | 76.23 | 78.95 |
| GSMUA_Achr6P17830_001 | Banana | cytosol | 76.14 | 78.93 |
| Os11t0175900-01 | Rice | nucleus, plasma membrane | 52.2 | 77.99 |
| HORVU4Hr1G019290.1 | Barley | cytosol | 59.0 | 76.37 |
| EES09396 | Sorghum | cytosol | 71.32 | 71.75 |
| TraesCS4B01G094200.1 | Wheat | unclear | 70.71 | 71.14 |
| TraesCS4D01G091000.1 | Wheat | golgi | 70.54 | 70.97 |
| TraesCS4A01G222200.1 | Wheat | cytosol | 70.37 | 70.86 |
| Os02t0793100-01 | Rice | plasma membrane | 69.85 | 70.28 |
| Zm00001d053028_P001 | Maize | mitochondrion | 65.55 | 65.83 |
| Zm00001d004784_P001 | Maize | cytosol | 18.43 | 56.02 |
| CDX91928 | Canola | cytosol | 1.98 | 48.94 |
Protein Annotations
| EnsemblPlants:Solyc11g068640.1.1 | EnsemblPlantsGene:Solyc11g068640.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006810 | GO:GO:0006897 |
| GO:GO:0008150 | InterPro:ARM-type_fold | InterPro:TPLATE | PANTHER:PTHR36029 | SEG:seg | SUPFAM:SSF48371 |
| UniParc:UPI000276A608 | UniProt:K4DA21 | MapMan:22.1.4.1 | : | : | : |
Description
No Description!
Coordinates
chr11:-:53277419..53286441
Molecular Weight (calculated)
129430.0 Da
IEP (calculated)
5.326
GRAVY (calculated)
-0.160
Length
1161 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDILFAQIQA DLRSNDALRQ SGALLQALQQ SAAGRDISVI AKSAVEEIVA SPASAISKKL AFDLIRSTRL TADLWETVCT GIRNDLDFPD PDVTAAAVSI
0101: LAAIPSYRLG KLISDCNKQI SSCFDSPSDN LRFAITETLG CILARDDLVT LCENNMNLLD RVSNWWNRIG QNMLDKSDAV AKVAFESVGR LFQEFESKRM
0201: SRLAGDKLVD SENSVAIRSN WVSSMVDFVW RRRNALMARS LVLPIENFRA TVCPLVYAVK AVASGSLEVI KKLSRSSKNG NASSLDTVNV EKFVGVSDVV
0301: SHLAPFLASS LDPSLIFEVG INMLYLADVP GGKPEWASTS IIAILTLWDR QEFSSARESI VRAVVTNLHL LDLSMQVSLF NKLLLMVRNL RAESDRMHAL
0401: ACICRTALCV DLFAKESVRR GQKPVPGTDI ASLFENARIK EDLHSVTSKT LFREELVAML VESCFQLSLP LPEQKNSGME SRVIGALAYG TGYGALNWTE
0501: PALEVVEVCR PCVKWDCEGR TYAIDCYLKL LVRLCHIYDT RGGVKRVKDG ASQDQILNET RLQNLQRDLV KDLREVNTPR ICTRLIWAIS EHIDLEGLDP
0601: LLADDPEDPL NIIISNIHKV LFNIDSSASS TNRLQDVQAV LLCAQRLGSR NPRAGQLLIK ELEEFRTNAL ADSVNKHQCR LILQRIKYVT NHSESKWAGV
0701: GEARGDYPFS HHKLTVQFYD ASAAQDRKLE GLVHKAILEL WRPDPSELAL LLAKRVDSTL LKVPPSAYTL TGSSDPCYVE AYHLTDPSDG RFTLHLKVLN
0801: LTEIELNRVD LRVGLSGGLY FMDGSPQAVR QLRNLNSQEP VLTSVTVGVS HFERCDLWVQ VLYYPFYGSG PSDYEDSEED PQVMRQKKSM RPELGEPVIL
0901: RCQPYKIPLT ELLLPHKISP VEYFRLWPSL PAIVECTGTY TYEGSGFMAT AAQQYGESPF LSGLKSLSSK PFHRVCSHII RTVAGFELCF AAKTWYGGFL
1001: GMMVFGASEV SRNVDLGDET TTMMCKFVIR ASDESITKEI ASDFQGWLDD LTDGGVEYMP EDEVKVTAAE NLKISMERIA LLKAARPRPK SPKSEDEEEE
1101: EEEEDDDNNK NDDILNVEGG KTKGPTTLFK LTAEEAEHRA LQAAIIQEWH MLCKDRNTKV N
0101: LAAIPSYRLG KLISDCNKQI SSCFDSPSDN LRFAITETLG CILARDDLVT LCENNMNLLD RVSNWWNRIG QNMLDKSDAV AKVAFESVGR LFQEFESKRM
0201: SRLAGDKLVD SENSVAIRSN WVSSMVDFVW RRRNALMARS LVLPIENFRA TVCPLVYAVK AVASGSLEVI KKLSRSSKNG NASSLDTVNV EKFVGVSDVV
0301: SHLAPFLASS LDPSLIFEVG INMLYLADVP GGKPEWASTS IIAILTLWDR QEFSSARESI VRAVVTNLHL LDLSMQVSLF NKLLLMVRNL RAESDRMHAL
0401: ACICRTALCV DLFAKESVRR GQKPVPGTDI ASLFENARIK EDLHSVTSKT LFREELVAML VESCFQLSLP LPEQKNSGME SRVIGALAYG TGYGALNWTE
0501: PALEVVEVCR PCVKWDCEGR TYAIDCYLKL LVRLCHIYDT RGGVKRVKDG ASQDQILNET RLQNLQRDLV KDLREVNTPR ICTRLIWAIS EHIDLEGLDP
0601: LLADDPEDPL NIIISNIHKV LFNIDSSASS TNRLQDVQAV LLCAQRLGSR NPRAGQLLIK ELEEFRTNAL ADSVNKHQCR LILQRIKYVT NHSESKWAGV
0701: GEARGDYPFS HHKLTVQFYD ASAAQDRKLE GLVHKAILEL WRPDPSELAL LLAKRVDSTL LKVPPSAYTL TGSSDPCYVE AYHLTDPSDG RFTLHLKVLN
0801: LTEIELNRVD LRVGLSGGLY FMDGSPQAVR QLRNLNSQEP VLTSVTVGVS HFERCDLWVQ VLYYPFYGSG PSDYEDSEED PQVMRQKKSM RPELGEPVIL
0901: RCQPYKIPLT ELLLPHKISP VEYFRLWPSL PAIVECTGTY TYEGSGFMAT AAQQYGESPF LSGLKSLSSK PFHRVCSHII RTVAGFELCF AAKTWYGGFL
1001: GMMVFGASEV SRNVDLGDET TTMMCKFVIR ASDESITKEI ASDFQGWLDD LTDGGVEYMP EDEVKVTAAE NLKISMERIA LLKAARPRPK SPKSEDEEEE
1101: EEEEDDDNNK NDDILNVEGG KTKGPTTLFK LTAEEAEHRA LQAAIIQEWH MLCKDRNTKV N
0001: MDILFAQIQA DLRSNDALRQ SSALLQALQQ SAAGRDISVI AKSAVEEIVA SPASAVCKKL AFDLIRSTRL TPDLWDTVCS GVKTDLHFPD PDVTAAAVSI
0101: LAALPAFSLP KLISDCSSEI ASCFDSPSDN LRFSITETLG CILARDDLVT LCENNVGLLD KVSNWWARIG QNMLDKSDAV SKVAFESVGR LFQEFDSKRM
0201: SRLAGDKLVD SENSLAIRSK WVSSMVDIVW RKRSALMARS LVLPVETFRA TVFPLVFAVK AVASGSVEVI RQLSKASSAA AAANATVVDS NAEKLVGVSD
0301: LVTHLAPFLA SSLDPALIFE VGINMLYLAD VAGGKPEWAS QSIIAILTLW DRQEFSSARE SIVRAVVTNL HLLDLHMQVS LFRRLLLMVR NLRAESDRMH
0401: ALACICRTAL CVHLFARESA RRGQKPLPGT DIISLFEDAR IKDDLNSVTS KSLFREELVA MLVESCFQLS LPLPEQKNSG MESRVIGALA YGTGYGALNW
0501: TEPALEVVEV CRPCVKWDCD GRTYAVDCYL KLLVRLCHIY DTRGGVKRLK DGASQDQILN ETRLQNLQRE LVKDLQEVNT PRILGRLIWT IAEHIDLEGL
0601: DPLLADDPDD PLNIIIANIH KVLFNLDAAA TTSNRLQDVQ AVLLCAQRMG SRHARAGQLL TKELEEYRNH AAADTVSKHQ TRLILQRIKY VSNLPERKWA
0701: GVSETRGDYP FSHHKLTVQF YEPSAAQDRK LEGLIHKAIL ELWRPKPTEL TLFLTKGVDS TSIKVPPTAY PLTGSSDPCY IEAYHLADTN DGRVTLHLKI
0801: INLTELELNR VDIRVGLSGA LYFMDGSPQA VRQLRNLVSQ DPVQCSVTVG VSQFERCGFW VQVLYYPFRG ARGEYDGDYI EEDPQIMKQK RGSKAELGEP
0901: VILRCQPYKI PLTELLLPHK ISPVEFFRLW PSLPAVAEYT GTYMYEGSGF MATAAQQYGA SPFLSGLKSL SSKPFHRVCS HIIRTVAGFQ LCYAAKTWHG
1001: GFVGMMIFGA SEVSRNMDLG DETTTMMCKF VVRASEASIT KQIESDIQGW CDDLTDGGVE YMPEDEVKAT AAEKLKISME RIALLKAAQP KKTSKIEEES
1101: ENEEEEEGEE EDDDEEVKEK KEKEEGKDKE EKKKKEKEKG TFSKLTAEET EHMALQAAVL QEWHILCKDR KYTKVN
0101: LAALPAFSLP KLISDCSSEI ASCFDSPSDN LRFSITETLG CILARDDLVT LCENNVGLLD KVSNWWARIG QNMLDKSDAV SKVAFESVGR LFQEFDSKRM
0201: SRLAGDKLVD SENSLAIRSK WVSSMVDIVW RKRSALMARS LVLPVETFRA TVFPLVFAVK AVASGSVEVI RQLSKASSAA AAANATVVDS NAEKLVGVSD
0301: LVTHLAPFLA SSLDPALIFE VGINMLYLAD VAGGKPEWAS QSIIAILTLW DRQEFSSARE SIVRAVVTNL HLLDLHMQVS LFRRLLLMVR NLRAESDRMH
0401: ALACICRTAL CVHLFARESA RRGQKPLPGT DIISLFEDAR IKDDLNSVTS KSLFREELVA MLVESCFQLS LPLPEQKNSG MESRVIGALA YGTGYGALNW
0501: TEPALEVVEV CRPCVKWDCD GRTYAVDCYL KLLVRLCHIY DTRGGVKRLK DGASQDQILN ETRLQNLQRE LVKDLQEVNT PRILGRLIWT IAEHIDLEGL
0601: DPLLADDPDD PLNIIIANIH KVLFNLDAAA TTSNRLQDVQ AVLLCAQRMG SRHARAGQLL TKELEEYRNH AAADTVSKHQ TRLILQRIKY VSNLPERKWA
0701: GVSETRGDYP FSHHKLTVQF YEPSAAQDRK LEGLIHKAIL ELWRPKPTEL TLFLTKGVDS TSIKVPPTAY PLTGSSDPCY IEAYHLADTN DGRVTLHLKI
0801: INLTELELNR VDIRVGLSGA LYFMDGSPQA VRQLRNLVSQ DPVQCSVTVG VSQFERCGFW VQVLYYPFRG ARGEYDGDYI EEDPQIMKQK RGSKAELGEP
0901: VILRCQPYKI PLTELLLPHK ISPVEFFRLW PSLPAVAEYT GTYMYEGSGF MATAAQQYGA SPFLSGLKSL SSKPFHRVCS HIIRTVAGFQ LCYAAKTWHG
1001: GFVGMMIFGA SEVSRNMDLG DETTTMMCKF VVRASEASIT KQIESDIQGW CDDLTDGGVE YMPEDEVKAT AAEKLKISME RIALLKAAQP KKTSKIEEES
1101: ENEEEEEGEE EDDDEEVKEK KEKEEGKDKE EKKKKEKEKG TFSKLTAEET EHMALQAAVL QEWHILCKDR KYTKVN
Arabidopsis Description
TPLATEProtein TPLATE [Source:UniProtKB/Swiss-Prot;Acc:F4J8D3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.