Factsheet for Solyc02g082530.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g007740.2.1
Solyc01g066310.2.1
Solyc01g102510.2.1
Solyc02g090570.2.1
Solyc03g116600.2.1
Solyc04g078540.2.1
Solyc04g081410.2.1
Solyc05g054370.2.1
Solyc06g068080.2.1
Solyc07g064800.2.1
Solyc10g078790.1.1
Solyc10g082030.1.1
Solyc11g068640.1.1
Solyc12g005080.1.1
Solyc12g088670.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20760.1	Solyc03g116600.2.1	AT1G15370.1	24529374
AT1G20760.1	Solyc06g068080.2.1	AT1G15370.1	24529374
AT1G20760.1	Solyc04g081410.2.1	AT1G47830.1	24529374
AT1G20760.1	Solyc11g068640.1.1	AT3G01780.1	24529374
AT1G20760.1	Solyc01g066310.2.1	AT3G06810.1	24529374
AT1G20760.1	Solyc05g054370.2.1	AT3G06810.1	24529374
AT1G20760.1	Solyc01g007740.2.1	AT3G11630.1	24529374
AT1G20760.1	Solyc10g082030.1.1	AT3G11630.1	24529374
AT1G20760.1	Solyc02g090570.2.1	AT3G50590.1	24529374
AT1G20760.1	Solyc01g102510.2.1	AT5G24710.1	24529374
AT1G20760.1	Solyc04g078540.2.1	AT5G43060.1	24529374
AT1G20760.1	Solyc12g088670.1.1	AT5G43060.1	24529374
AT1G20760.1	Solyc07g064800.2.1	AT5G55070.1	24529374
AT1G20760.1	Solyc12g005080.1.1	AT5G55070.1	24529374
AT1G20760.1	Solyc10g078790.1.1	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025666	Potato	cytosol	25.77	15.43
AT1G20760.1	Thale cress	cytosol	47.42	4.51
CDX96625	Canola	cytosol	43.3	4.29
CDY33644	Canola	cytosol	43.3	4.23
VIT_18s0122g01080.t01	Wine grape	cytosol	43.3	4.17
Bra025842.1-P	Field mustard	cytosol	41.24	3.99
KRH60909	Soybean	endoplasmic reticulum	43.3	3.95
CDY66337	Canola	cytosol	40.21	3.94
CDY29508	Canola	cytosol	40.21	3.93
CDY31869	Canola	cytosol	39.18	3.83
KRH51589	Soybean	endoplasmic reticulum	42.27	3.81
Bra016455.1-P	Field mustard	nucleus, plastid	43.3	3.7
GSMUA_Achr8P13420_001	Banana	cytosol	36.08	3.68
CDY01356	Canola	cytosol	37.11	3.67
Bra012247.1-P	Field mustard	cytosol	36.08	3.5
GSMUA_Achr5P19150_001	Banana	endoplasmic reticulum	31.96	3.27
TraesCS7A01G553100.1	Wheat	cytosol	42.27	3.17
TraesCS7D01G539600.2	Wheat	cytosol	41.24	3.1
HORVU7Hr1G121230.4	Barley	cytosol	41.24	3.09
TraesCS7B01G476800.3	Wheat	cytosol	41.24	3.08
Zm00001d037125_P009	Maize	cytosol	38.14	3.06
Zm00001d014862_P002	Maize	cytosol	37.11	2.97
EER89004	Sorghum	cytosol	37.11	2.94
TraesCS4B01G324500.1	Wheat	cytosol	24.74	2.23
TraesCS4D01G321600.1	Wheat	cytosol	24.74	2.2
EER92924	Sorghum	cytosol	23.71	2.2
Os03t0130500-01	Rice	plasma membrane	23.71	2.15
GSMUA_Achr4P11750_001	Banana	cytosol	23.71	2.14
HORVU4Hr1G082280.2	Barley	cytosol	24.74	2.12
TraesCS5A01G497000.1	Wheat	cytosol	23.71	2.12
Solyc04g082560.2.1	Tomato	cytosol	26.8	2.12
Solyc08g069130.1.1	Tomato	cytosol	2.06	1.01
Solyc07g064910.2.1	Tomato	cytosol	4.12	0.73
Solyc12g014460.1.1	Tomato	cytosol	4.12	0.73
Solyc11g012020.1.1	Tomato	cytosol	4.12	0.73
Solyc10g006110.2.1	Tomato	cytosol	3.09	0.55
Solyc02g082540.2.1	Tomato	nucleus	4.12	0.38
Zm00001d048338_P035	Maize	cytosol	3.09	0.28
Zm00001d027503_P036	Maize	cytosol	1.03	0.09
Os06t0728600-00	Rice	plasma membrane	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc02g082530.1.1	EnsemblPlantsGene:Solyc02g082530.1	PANTHER:PTHR11216	PANTHER:PTHR11216:SF116	UniParc:UPI00027680E8	UniProt:K4BAC3
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:46202960..46203253

Molecular Weight (calculated)

11228.3 Da

IEP (calculated)

4.827

GRAVY (calculated)

-1.297

Length

97 amino acids

Sequence
(BLAST)

1: MRSTRDSDYD HGSFQQRDSF ARFDSFRSTA DSDYNFGLFP PRESLSRFDS MSSTRDTDHR HGFTSFDDAD PFGSNDPFKT SAESQTPRRD SDSWKAF

Best Arabidopsis Sequence Match ( AT1G20760.1 )
(BLAST)

0001: MAGQNPNMDQ FEAYFKRADL DGDGRISGAE AVGFFQGSGL SKQVLAQIWS LSDRSHSGFL DRQNFYNSLR LVTVAQSKRD LTPEIVNAAL NTPAAAKIPP
0101: PKINLSAIPA PRPNPAATTV GPVSGFGGPG APNAIVNQNY FPPQQNQQMR PNQGISGLTS LRPAAGPEYR PSALSGQFQP VPVGSVTHPP QPVPTSVSGP
0201: GSSTFNLNSL YAGAGNTSGY SSGFGGGSLA APSPGLKQES HIDPKALVVS GNGGDMFSSF QQKQEPTLSN SSISSAIVPT SAGIQPPTKP NALDSLQSTF
0301: SMLPSGNQLQ QPRPAASSQP AVSSQGPSSG LPPGSAVGSG HSTPAGNNQP PWPKMKPSDV QKYTKVFMEV DSDKDGKITG EQARNLFLSW RLPREVLKHV
0401: WELSDQDNDT MLSLREFCIS LYLMERYREG RPLPTALPSS IMFDETLLSI SGAPSHGYAN AGWGSGQGFV QQPGMGARPI TPTTGMRPPV PAPGPQPGSG
0501: IPPNQPRNQA PVLDAPFANH LGNGYSASSN LPEAAADEEK VDEKQNAYMD SREKLDYYRT KMQDIVLYKS RCDNRLNEIS ERASADKREA ETLAKKYEEK
0601: YKQVAEIGSK LTIEEARFRE IEGRKMELSQ AIVNMEQGGS ADGLLQVRAD RIQSDLEELM KALTERCKKH GLEVNSKALV DLPAGWQPGI QEGAALWDEE
0701: WDKFEDEGFG NEITFDKSKE QNSSGEKENG TVDDGSGPPD SPTHVEDNYG PFSETSDRHH ESEYGTTHSE DRSPRDSPVS RNATEVPSPD YSQGKNSEFF
0801: DDSNWASAFD TNDDVDSVWG FDASKSQDGD YFGSGDDFGG NTARADSPSS RSFGAQRKSQ FAFDDSVPST PLSRFGNSPP RFSDASARDN NFDSFSRFDS
0901: FNTSEAGAGF SSQPERLSRF DSINSSKDFG GAAFSRFDSI NSSRDVTGAE KFSRFDSINS SKDFGGPSLS RFDSMNSTKD FSGSHGYSFD DADPFGSTGP
1001: FKVSSDESPT KRSDNWNSF

Arabidopsis Description

Calcium-binding EF hand family protein [Source:UniProtKB/TrEMBL;Acc:Q9LM78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.