Factsheet for Bra016455.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001415.1-P
Bra002727.1-P
Bra002934.1-P
Bra006819.1-P
Bra009790.1-P
Bra010799.1-P
Bra015600.1-P
Bra022067.1-P
Bra026139.1-P
Bra026769.1-P
Bra028992.1-P
Bra029606.1-P
Bra033657.1-P
Bra034824.1-P
Bra035551.1-P
Bra036092.1-P
Bra036523.1-P
Bra038667.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20760.1	Bra026139.1-P	AT1G15370.1	24529374
AT1G20760.1	Bra026769.1-P	AT1G15370.1	24529374
AT1G20760.1	Bra015600.1-P	AT1G47830.1	24529374
AT1G20760.1	Bra022067.1-P	AT3G01780.1	24529374
AT1G20760.1	Bra029606.1-P	AT3G06810.1	24529374
AT1G20760.1	Bra001415.1-P	AT3G11630.1	24529374
AT1G20760.1	Bra034824.1-P	AT3G11630.1	24529374
AT1G20760.1	Bra038667.1-P	AT3G11630.1	24529374
AT1G20760.1	Bra036092.1-P	AT3G50590.1	24529374
AT1G20760.1	Bra009790.1-P	AT5G24710.1	24529374
AT1G20760.1	Bra010799.1-P	AT5G24710.1	24529374
AT1G20760.1	Bra036523.1-P	AT5G24710.1	24529374
AT1G20760.1	Bra033657.1-P	AT5G43060.1	24529374
AT1G20760.1	Bra002934.1-P	AT5G55070.1	24529374
AT1G20760.1	Bra028992.1-P	AT5G55070.1	24529374
AT1G20760.1	Bra035551.1-P	AT5G55070.1	24529374
AT1G20760.1	Bra002727.1-P	AT5G57460.1	24529374
AT1G20760.1	Bra006819.1-P	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96625	Canola	cytosol	83.7	96.94
Bra025842.1-P	Field mustard	cytosol	74.19	83.95
Bra012247.1-P	Field mustard	cytosol	73.22	83.1
AT1G20760.1	Thale cress	cytosol	73.92	82.34
KRH60909	Soybean	endoplasmic reticulum	46.26	49.44
VIT_18s0122g01080.t01	Wine grape	cytosol	43.35	48.91
KRH51589	Soybean	endoplasmic reticulum	45.73	48.23
PGSC0003DMT400025666	Potato	cytosol	6.34	44.44
Solyc02g082530.1.1	Tomato	nucleus	3.7	43.3
GSMUA_Achr5P19150_001	Banana	endoplasmic reticulum	33.74	40.44
EER92924	Sorghum	cytosol	37.09	40.29
GSMUA_Achr8P13420_001	Banana	cytosol	33.48	39.92
Os03t0130500-01	Rice	plasma membrane	37.18	39.51
TraesCS4D01G321600.1	Wheat	cytosol	36.92	38.48
TraesCS5A01G497000.1	Wheat	cytosol	36.56	38.28
TraesCS4B01G324500.1	Wheat	cytosol	36.3	38.25
HORVU4Hr1G082280.2	Barley	cytosol	37.18	37.31
GSMUA_Achr4P11750_001	Banana	cytosol	34.27	36.25
Solyc04g082560.2.1	Tomato	cytosol	39.12	36.16
Bra012288.1-P	Field mustard	cytosol	34.8	34.86
Zm00001d048338_P035	Maize	cytosol	33.04	34.56
Os06t0728600-00	Rice	plasma membrane	27.14	34.45
Bra016413.1-P	Field mustard	cytosol	34.19	34.04
Zm00001d027503_P036	Maize	cytosol	31.63	33.84
Zm00001d014862_P002	Maize	cytosol	34.54	32.37
Zm00001d037125_P009	Maize	cytosol	34.19	32.12
EER89004	Sorghum	cytosol	34.54	31.97
Bra017933.1-P	Field mustard	cytosol	33.04	30.41
TraesCS7D01G539600.2	Wheat	cytosol	34.01	29.88
TraesCS7B01G476800.3	Wheat	cytosol	34.19	29.87
TraesCS7A01G553100.1	Wheat	cytosol	33.92	29.75
HORVU7Hr1G121230.4	Barley	cytosol	32.78	28.7
Bra035794.1-P	Field mustard	cytosol	8.81	19.05
Bra029477.1-P	Field mustard	cytosol	8.72	18.13
Bra038259.1-P	Field mustard	cytosol	8.63	17.19

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.30.10	MapMan:22.1.4.7	EnsemblPlantsGene:Bra016455	EnsemblPlants:Bra016455.1	EnsemblPlants:Bra016455.1-P
ncoils:Coil	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:EH_dom	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005509	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR000261
InterPro:IPR002048	InterPro:IPR009071	InterPro:IPR036910	UniProt:M4DIX8	PFAM:PF12763	ScanProsite:PS00018
PFscan:PS50031	PFscan:PS50118	PFscan:PS50222	PANTHER:PTHR11216	PANTHER:PTHR11216:SF116	SMART:SM00027
SMART:SM00054	SUPFAM:SSF47095	SUPFAM:SSF47473	UniParc:UPI0002546B5D	SEG:seg	:

Description

AT1G20760 (E=5e-214) | calcium-binding EF hand family protein

Coordinates

chrA08:-:18548475..18554862

Molecular Weight (calculated)

121860.0 Da

IEP (calculated)

5.108

GRAVY (calculated)

-0.813

Length

1135 amino acids

Sequence
(BLAST)

0001: MKGGKSKTET RSSKLSVAKK PAKAAGRSKA AAKDPNKPKR PASAFFVFME DFRQTYKKDH PNNKSVAAEE GPKEDEEESD KSVSEVNDED DADDGSDEGD
0101: PSKMGGQNPN MDQFEAYFKR ADLDGDGRIS GAEAVGFFQG SGLPKPVLFQ IWSLSDRSGS GFLGRQDFYN SLRLVTVAQS KRDLTPEIVN AALNTPAAAK
0201: IPAPRINLSA IPAPQPNPPA TTARPVSSAG YQNAGFRGPG APNANVNQNY FPPQQNQQVR PNQGASGLTS LRPNALPGQF QPVPVGSATR PSQTIPTGAP
0301: GPGGSEYRPS ALPGQFQPGP VGIATRPPQA APTSAPGPAG SEYRPSALPG HFQPGPVGSV TRPPQAVPTS ASGPGGSTLN LNNLYAGNTS GYSSGFGGGS
0401: LAEPSPGIKP ESQVDPKALV ISGNGGDMFS SFQQRPQPTL SNSSMSSAIV PASTGTQPPP KPNALDSLQS TFSMLPAGNQ PQQPRPAASS QGPSSGFPHG
0501: SAVGPGHPTP AGNNQPPWPK MKPSDVQKYT KVFIEVDSDR DGRITGEQAR NLFLSWRLPR EVLKHVWELS DQDNDTMLSL REFCISLYLM ERYKEGRPLP
0601: PALPSSIMYD ETLLSLSGAP SRGYANAGWG SGQGYVQQPV MGARPVIPPT GMRPPVPHPG SGIASNEQRN QAPALDDAFA SHLGNGYSAS TNPQETAVDG
0701: EKVDEKKNAY MDSREKLEYY RTKMQDIVLY KSRCDNILNE ISERASADKR EAETLAKKYE EKYKQVAELG SKLTIEEARF REIEGRKMEL SQAIVNMEQG
0801: GSADGLLQEL MKALTERCKK HGLEVKSKAL VDLPAGWQPG IQEGAALWDE EWDKFEDEGE KENGTVDDGS GPPPDSPTHL DENYGPFSKT SDHHHESEDE
0901: SGRSPRDSLV SRTATEVPSP DNAHEKSSEF FDDSNWASAF DTNDDVDSVW GLDASRSQDG DYFGENSGRA DSPTSRSFAG QRKGPFGFDD SVPSTPLSRF
1001: GNSPPRFSDA SARDNNFDSF SRFDSFNHSE AGVSSQPERL SRFDSINSSK DFGGAAFSRF DSINSSRDFG GGAEKLSRFD SINSSRDFGG PSLSRFDSMN
1101: STKDHGYSFD DADPFGSTGP FKVSFDDKSP KKNSF

Best Arabidopsis Sequence Match ( AT1G20760.1 )
(BLAST)

0001: MAGQNPNMDQ FEAYFKRADL DGDGRISGAE AVGFFQGSGL SKQVLAQIWS LSDRSHSGFL DRQNFYNSLR LVTVAQSKRD LTPEIVNAAL NTPAAAKIPP
0101: PKINLSAIPA PRPNPAATTV GPVSGFGGPG APNAIVNQNY FPPQQNQQMR PNQGISGLTS LRPAAGPEYR PSALSGQFQP VPVGSVTHPP QPVPTSVSGP
0201: GSSTFNLNSL YAGAGNTSGY SSGFGGGSLA APSPGLKQES HIDPKALVVS GNGGDMFSSF QQKQEPTLSN SSISSAIVPT SAGIQPPTKP NALDSLQSTF
0301: SMLPSGNQLQ QPRPAASSQP AVSSQGPSSG LPPGSAVGSG HSTPAGNNQP PWPKMKPSDV QKYTKVFMEV DSDKDGKITG EQARNLFLSW RLPREVLKHV
0401: WELSDQDNDT MLSLREFCIS LYLMERYREG RPLPTALPSS IMFDETLLSI SGAPSHGYAN AGWGSGQGFV QQPGMGARPI TPTTGMRPPV PAPGPQPGSG
0501: IPPNQPRNQA PVLDAPFANH LGNGYSASSN LPEAAADEEK VDEKQNAYMD SREKLDYYRT KMQDIVLYKS RCDNRLNEIS ERASADKREA ETLAKKYEEK
0601: YKQVAEIGSK LTIEEARFRE IEGRKMELSQ AIVNMEQGGS ADGLLQVRAD RIQSDLEELM KALTERCKKH GLEVNSKALV DLPAGWQPGI QEGAALWDEE
0701: WDKFEDEGFG NEITFDKSKE QNSSGEKENG TVDDGSGPPD SPTHVEDNYG PFSETSDRHH ESEYGTTHSE DRSPRDSPVS RNATEVPSPD YSQGKNSEFF
0801: DDSNWASAFD TNDDVDSVWG FDASKSQDGD YFGSGDDFGG NTARADSPSS RSFGAQRKSQ FAFDDSVPST PLSRFGNSPP RFSDASARDN NFDSFSRFDS
0901: FNTSEAGAGF SSQPERLSRF DSINSSKDFG GAAFSRFDSI NSSRDVTGAE KFSRFDSINS SKDFGGPSLS RFDSMNSTKD FSGSHGYSFD DADPFGSTGP
1001: FKVSSDESPT KRSDNWNSF

Arabidopsis Description

Calcium-binding EF hand family protein [Source:UniProtKB/TrEMBL;Acc:Q9LM78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.