Factsheet for Solyc10g006110.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g065380.2.1
Solyc11g018610.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20290.1	Solyc06g065380.2.1	AT4G09570.1	19130088
AT3G20290.1	Solyc11g018610.1.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037353	Potato	cytosol	98.16	98.16
Solyc12g014460.1.1	Tomato	cytosol	84.16	83.85
Solyc07g064910.2.1	Tomato	cytosol	81.77	81.47
GSMUA_Achr3P20100_001	Banana	cytosol, endoplasmic reticulum	63.17	79.77
VIT_19s0090g01130.t01	Wine grape	cytosol	79.74	79.45
KRH73798	Soybean	cytosol	79.74	78.87
AT3G20290.1	Thale cress	cytosol	78.82	78.53
CDY29816	Canola	cytosol	74.59	77.0
CDY25408	Canola	cytosol	74.4	76.95
Bra035794.1-P	Field mustard	cytosol	74.22	76.76
CDY50093	Canola	cytosol	74.03	75.71
KRG98685	Soybean	cytosol	74.77	75.05
CDY50090	Canola	cytosol	74.77	71.23
Bra038259.1-P	Field mustard	cytosol	74.59	71.05
Solyc11g012020.1.1	Tomato	cytosol	71.45	70.93
Solyc04g082560.2.1	Tomato	cytosol	19.34	8.55
Solyc02g082540.2.1	Tomato	nucleus	16.02	8.37
Solyc02g082530.1.1	Tomato	nucleus	0.55	3.09
Solyc08g069130.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.268.20	Gene3D:3.40.50.300	MapMan:35.1	InterPro:Dynamin_SF	InterPro:EF-hand-dom_pair
InterPro:EF_hand_dom	InterPro:EHD_N	InterPro:EH_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	GO:GO:0005515	GO:GO:0005525	InterPro:G_DYNAMIN_dom	InterPro:IPR000261	InterPro:IPR002048
InterPro:IPR030381	UniProt:K4CXE3	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF12763	PFAM:PF16880
PFscan:PS50031	PFscan:PS50222	PFscan:PS51718	PANTHER:PTHR11216	PANTHER:PTHR11216:SF114	SMART:SM00027
SUPFAM:SSF47473	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc10g006110.2	EnsemblPlants:Solyc10g006110.2.1	UniParc:UPI000276CB8A	SEG:seg

Description

No Description!

Coordinates

chr10:-:847004..852441

Molecular Weight (calculated)

61152.2 Da

IEP (calculated)

8.275

GRAVY (calculated)

-0.423

Length

543 amino acids

Sequence
(BLAST)

001: MEFDTYPINR CSKRNEKIYQ EWFSSADSDG DGRLIGKDAT SFLAMSNLPR EDLKQVWAIA DSKRQGYLGF KEFITAMQLV SLAQAGHAVT SDFSNADVDF
101: ENLQPPTMEG LDGLLAKKKR VAKWVPDSNG SLSLSSRANW FSSSKSAKKV PSNYVTSITD GLKKLYAKKL KPLEVAYHYS DFVSPLLANS DFDAKPMVML
201: LGQYSTGKTT FIKHLLRSSY PGAHIGPEPT TDRFVVVMNG PDERSIPGNT IAVQAEMPFS GLTSFGTAFL SKFECSQMPH PLLENITFVD TPGVLSGEKQ
301: RTQRSYDFTG VTSWFAAKCD LILLLFDPHK LDISDEFKRV IASLQGHDDK IRVVLNKADK VDTQQLMRVY GALMWSLGKV QNTPEVSRVY IGSFNDSPIN
401: EDLTGPLGKE LFEKEQDDLL TDLKNIPKKA CDRRVNEFVK RARAAKVHAY ITSHLKKEMP AMMGKSKTQK RLIDNLADEF VKIQKEHHLP PGDFPDVQHF
501: REILSGYNID KFEKLKPKLI QAVDDMLGYD IPELLKNFKN PYE

Best Arabidopsis Sequence Match ( AT3G20290.3 )
(BLAST)

001: MEIESVAAGS CSKENQMIYK EWFEFSDSDG DGRITGNDAI KFFTMSNLPR PELKQIWAIA DSKRQGYLGF KEFIVAMQLV SLAQTGHEIS HEVLISDVDF
101: KNINPPTMEG LGVLMAKKKH SSKSSDPNMN GSPAADTSLT AHWFSSKSSK KISLSSVTSI VDGLKRLYIQ KLKPLEVAYR FNDFVSPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKS TYPGAHIGPE PTTDRFVVVM SGPDERSIPG NTVAVQADMP FSGLTTFGTA FLSKFECSQM PHPLLEHVTF VDTPGVLSGE
301: KQRTQRAYDF TGVTSWFASK CDLILLLFDP HKLDVSDEFK RVISSLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVSR VYIGSFSDKP
401: INEAATGPIG RELFEKEQDD LLADLKDIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPAIMGKAKA QQKLIDNLED EFGKVQREHH LPKGDFPNVD
501: HFREVLSGYN IDKFEKLKPK MLQTVDDMLG YDIPELLKNF KNPYD

Arabidopsis Description

EHD1EHD1 [Source:UniProtKB/TrEMBL;Acc:A0A178VAZ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.