Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G20290.1 | CDX90725 | AT4G09570.1 | 19130088 |
| AT3G20290.1 | CDY05064 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25408 | Canola | cytosol | 99.24 | 99.43 |
| CDY50093 | Canola | cytosol | 93.35 | 92.47 |
| AT3G20290.1 | Thale cress | cytosol | 93.92 | 90.64 |
| CDY50090 | Canola | cytosol | 93.73 | 86.49 |
| VIT_19s0090g01130.t01 | Wine grape | cytosol | 84.22 | 81.28 |
| KRH73798 | Soybean | cytosol | 81.75 | 78.32 |
| PGSC0003DMT400033476 | Potato | cytosol | 80.8 | 77.98 |
| Solyc12g014460.1.1 | Tomato | cytosol | 80.61 | 77.8 |
| GSMUA_Achr3P20100_001 | Banana | cytosol, endoplasmic reticulum | 63.31 | 77.44 |
| Solyc07g064910.2.1 | Tomato | cytosol | 80.23 | 77.43 |
| PGSC0003DMT400057437 | Potato | cytosol | 80.23 | 77.43 |
| PGSC0003DMT400037353 | Potato | cytosol | 77.76 | 75.32 |
| Solyc10g006110.2.1 | Tomato | cytosol | 77.0 | 74.59 |
| KRG98685 | Soybean | cytosol | 76.62 | 74.49 |
| CDX94536 | Canola | cytosol | 73.57 | 70.75 |
| CDY16689 | Canola | cytosol | 73.38 | 70.7 |
| CDY29508 | Canola | cytosol | 20.15 | 10.67 |
| CDY31869 | Canola | cytosol | 19.96 | 10.6 |
| CDX96625 | Canola | cytosol | 19.58 | 10.51 |
| CDY66337 | Canola | cytosol | 19.77 | 10.51 |
| CDY01356 | Canola | cytosol | 19.2 | 10.31 |
| CDY33644 | Canola | cytosol | 18.82 | 9.96 |
| CDY00394 | Canola | cytosol | 21.1 | 9.7 |
| CDY38814 | Canola | cytosol | 20.91 | 9.62 |
| CDY08192 | Canola | cytosol | 21.1 | 9.54 |
| CDY04654 | Canola | cytosol | 21.29 | 9.52 |
| CDX96582 | Canola | cytosol | 20.53 | 9.45 |
| CDY01320 | Canola | cytosol | 21.1 | 9.4 |
Protein Annotations
| Gene3D:1.10.238.10 | Gene3D:1.10.268.20 | Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078GWB7 | UniProt:A0A078GWB7 |
| EnsemblPlants:CDY29816 | ProteinID:CDY29816 | ProteinID:CDY29816.1 | InterPro:Dynamin_SF | InterPro:EF-hand-dom_pair | InterPro:EF_hand_dom |
| InterPro:EHD_N | InterPro:EH_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| GO:GO:0005515 | GO:GO:0005525 | EnsemblPlantsGene:GSBRNA2T00043707001 | InterPro:G_DYNAMIN_dom | InterPro:IPR000261 | InterPro:IPR002048 |
| InterPro:IPR030381 | InterPro:P-loop_NTPase | PFAM:PF00350 | PFAM:PF12763 | PFAM:PF16880 | PFscan:PS50031 |
| PFscan:PS50222 | PFscan:PS51718 | PANTHER:PTHR11216 | PANTHER:PTHR11216:SF114 | SMART:SM00027 | SUPFAM:SSF47473 |
| SUPFAM:SSF52540 | UniParc:UPI0004EEA9AD | SEG:seg | : | : | : |
Description
BnaC05g31740DBnaC05g31740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWB7]
Coordinates
chrLK032244:-:326369..330028
Molecular Weight (calculated)
59101.2 Da
IEP (calculated)
7.254
GRAVY (calculated)
-0.314
Length
526 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIDSVAAGS CSKENQIIYK DWFEFADSAD GDGRITGNDA IKFFSMSNLP RPELKQVWAI ADAKRQGYLG FKEFIVAMQL VSLAQTGHEI SHEVLHSDVD
101: FKNMNPPVMD GLIVLMAKKK KKHSPKSSDP NGSPAADASL TAHWFSSKSS KKISLSSVTS IIDGLKRLYI QKLKPLEVAY QFNDFVSPLL TNSDFDAKPM
201: VMLLGAHIGP EPTTDRFVVV MSGPDERSIP GNTVAVQADM PFSGLTSFGT AFLSKFECSQ MPHPLLEHIT FVDTPGVLSG EKQRTQRAYE FTGVTSWFAS
301: KCDLILLLFD PHKLDVSDEF KRVISSLRGH DDKIRVVLNK ADQVDTQQLM RVYGALMWSL GKVLNTPEVA RVYIGSFSDK PINEVSTGPI GRELFEMEQE
401: DLLSDLKNIP KKACDRRINE FVKRARAAKI HAYIISHLKK EMPAIMGKAK AQQKLMDNLE DVFGKVQREH HLPKGDFPNV DHFREVLSGY NFDKFEKLKP
501: KMLQTVDDML GYDIPELLKN FKNPYD
101: FKNMNPPVMD GLIVLMAKKK KKHSPKSSDP NGSPAADASL TAHWFSSKSS KKISLSSVTS IIDGLKRLYI QKLKPLEVAY QFNDFVSPLL TNSDFDAKPM
201: VMLLGAHIGP EPTTDRFVVV MSGPDERSIP GNTVAVQADM PFSGLTSFGT AFLSKFECSQ MPHPLLEHIT FVDTPGVLSG EKQRTQRAYE FTGVTSWFAS
301: KCDLILLLFD PHKLDVSDEF KRVISSLRGH DDKIRVVLNK ADQVDTQQLM RVYGALMWSL GKVLNTPEVA RVYIGSFSDK PINEVSTGPI GRELFEMEQE
401: DLLSDLKNIP KKACDRRINE FVKRARAAKI HAYIISHLKK EMPAIMGKAK AQQKLMDNLE DVFGKVQREH HLPKGDFPNV DHFREVLSGY NFDKFEKLKP
501: KMLQTVDDML GYDIPELLKN FKNPYD
001: MEIESVAAGS CSKENQMIYK EWFEFSDSDG DGRITGNDAI KFFTMSNLPR PELKQIWAIA DSKRQGYLGF KEFIVAMQLV SLAQTGHEIS HEVLISDVDF
101: KNINPPTMEG LGVLMAKKKH SSKSSDPNMN GSPAADTSLT AHWFSSKSSK KISLSSVTSI VDGLKRLYIQ KLKPLEVAYR FNDFVSPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKS TYPGAHIGPE PTTDRFVVVM SGPDERSIPG NTVAVQADMP FSGLTTFGTA FLSKFECSQM PHPLLEHVTF VDTPGVLSGE
301: KQRTQRAYDF TGVTSWFASK CDLILLLFDP HKLDVSDEFK RVISSLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVSR VYIGSFSDKP
401: INEAATGPIG RELFEKEQDD LLADLKDIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPAIMGKAKA QQKLIDNLED EFGKVQREHH LPKGDFPNVD
501: HFREVLSGYN IDKFEKLKPK MLQTVDDMLG YDIPELLKNF KNPYD
101: KNINPPTMEG LGVLMAKKKH SSKSSDPNMN GSPAADTSLT AHWFSSKSSK KISLSSVTSI VDGLKRLYIQ KLKPLEVAYR FNDFVSPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKS TYPGAHIGPE PTTDRFVVVM SGPDERSIPG NTVAVQADMP FSGLTTFGTA FLSKFECSQM PHPLLEHVTF VDTPGVLSGE
301: KQRTQRAYDF TGVTSWFASK CDLILLLFDP HKLDVSDEFK RVISSLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVSR VYIGSFSDKP
401: INEAATGPIG RELFEKEQDD LLADLKDIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPAIMGKAKA QQKLIDNLED EFGKVQREHH LPKGDFPNVD
501: HFREVLSGYN IDKFEKLKPK MLQTVDDMLG YDIPELLKNF KNPYD
Arabidopsis Description
EHD1EHD1 [Source:UniProtKB/TrEMBL;Acc:A0A178VAZ5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.