Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_03s0038g03870.t01 | Wine grape | cytosol | 44.62 | 50.99 |
KRH14013 | Soybean | endoplasmic reticulum | 46.54 | 46.67 |
KRH74101 | Soybean | endoplasmic reticulum | 36.92 | 44.76 |
CDY38814 | Canola | cytosol | 46.44 | 42.22 |
CDY08192 | Canola | cytosol | 47.21 | 42.22 |
CDY04654 | Canola | cytosol | 47.4 | 41.89 |
CDY00394 | Canola | cytosol | 45.87 | 41.7 |
Os06t0728600-00 | Rice | plasma membrane | 35.48 | 41.28 |
Bra012288.1-P | Field mustard | cytosol | 44.62 | 40.95 |
CDX96582 | Canola | cytosol | 44.81 | 40.77 |
CDY01320 | Canola | cytosol | 46.25 | 40.73 |
Bra016413.1-P | Field mustard | cytosol | 44.52 | 40.61 |
GSMUA_Achr4P11750_001 | Banana | cytosol | 41.44 | 40.17 |
Bra017933.1-P | Field mustard | cytosol | 47.31 | 39.9 |
AT1G21630.2 | Thale cress | cytosol | 47.69 | 39.78 |
GSMUA_Achr8P13420_001 | Banana | cytosol | 35.29 | 38.55 |
GSMUA_Achr5P19150_001 | Banana | endoplasmic reticulum | 34.62 | 38.01 |
Zm00001d037125_P009 | Maize | cytosol | 42.21 | 36.34 |
EER92924 | Sorghum | cytosol | 36.44 | 36.27 |
EER89004 | Sorghum | cytosol | 42.69 | 36.22 |
Zm00001d014862_P002 | Maize | cytosol | 41.92 | 36.0 |
Os03t0130500-01 | Rice | plasma membrane | 36.92 | 35.96 |
Zm00001d027503_P036 | Maize | cytosol | 35.38 | 34.68 |
TraesCS4B01G324500.1 | Wheat | cytosol | 35.77 | 34.54 |
TraesCS4D01G321600.1 | Wheat | cytosol | 35.96 | 34.34 |
TraesCS5A01G497000.1 | Wheat | cytosol | 35.77 | 34.32 |
Zm00001d048338_P035 | Maize | cytosol | 35.48 | 34.01 |
TraesCS7A01G553100.1 | Wheat | cytosol | 41.92 | 33.69 |
TraesCS7D01G539600.2 | Wheat | cytosol | 41.73 | 33.59 |
TraesCS7B01G476800.3 | Wheat | cytosol | 41.92 | 33.56 |
Solyc04g082560.2.1 | Tomato | cytosol | 39.52 | 33.47 |
HORVU4Hr1G082280.2 | Barley | cytosol | 36.06 | 33.16 |
HORVU7Hr1G121230.4 | Barley | cytosol | 40.77 | 32.72 |
Solyc12g014460.1.1 | Tomato | cytosol | 8.94 | 17.06 |
Solyc07g064910.2.1 | Tomato | cytosol | 8.94 | 17.06 |
Solyc11g012020.1.1 | Tomato | cytosol | 8.56 | 16.27 |
Solyc10g006110.2.1 | Tomato | cytosol | 8.37 | 16.02 |
Solyc02g082530.1.1 | Tomato | nucleus | 0.38 | 4.12 |
Solyc08g069130.1.1 | Tomato | cytosol | 0.0 | 0.0 |
Protein Annotations
Gene3D:1.10.238.10 | MapMan:22.1.4.7 | ncoils:Coil | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom |
InterPro:EH_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005515 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0016020 |
InterPro:IPR000261 | InterPro:IPR002048 | UniProt:K4BAC4 | PFAM:PF12763 | PFAM:PF13202 | ScanProsite:PS00018 |
PFscan:PS50031 | PFscan:PS50222 | PANTHER:PTHR11216 | PANTHER:PTHR11216:SF116 | SMART:SM00027 | SMART:SM00054 |
SUPFAM:SSF47473 | EnsemblPlantsGene:Solyc02g082540.2 | EnsemblPlants:Solyc02g082540.2.1 | UniParc:UPI00027680E7 | SEG:seg | : |
Description
No Description!
Coordinates
chr2:-:46202935..46214668
Molecular Weight (calculated)
113618.0 Da
IEP (calculated)
5.965
GRAVY (calculated)
-0.682
Length
1040 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAQNQTDQF EAYFRRADLD QDGRISGVEA VSFFQGSNLP KPVLAQIWTY VDQSRTGFLS RQEFFNYLKL VTVAQKRELT PEIVKAALFT PASAKIPAPQ
0101: INLAAVAGPR PANRVGSAVP PVSRAAPTEA PSFGIRGQQG LPVPQSQYMR PPRPSVQSTS FPSQSGASSH GMPGGTMAAF SQANSSDWLS GNGGSQAAVT
0201: SQAPNISINS RSQDGFDHAS PQQNQQKTTY SATPGNGFAS DSLFGDAFSV ASVQPKQNSA PSISSAGSFP VSPAIVSASA GLQHPVKASP IVSQVALPQK
0301: PVNQHQQAQL TGRPNKQVLV PSAGANPNAA GNSRSSQSQI PWPRMTRSDY QKYSKVFMAV DSDRDGKISG LEARNLFLSW KLPREVLKQV WDLSDQDNDS
0401: MLSLREFCIA LYLMERHREG HPLPSVLPTN LIFDESLLPA SGQPVPPHGA VAWRHTPATQ QTQGPRVVPG QMASGAPGRP PRPVPIPQPN EVVQPGQQKP
0501: KVPALEKHLV DQLSQEEQDA LSSKFQEATD AEKKVMELEK EILEAKEKIQ FYHAKMQEII LYKSRCDNRL NEITQRTSAD KREVELLAKK YEEKYKQTGD
0601: VASKLTIEEA TFRDIQEKKM ELYKEIVKMD QDGKTDGIQD RASHIQVNLE ELVKSLNERC KTYGLRAKPT TLLELPFGWQ PGIQEVAADW DEEWDKFEDE
0701: GFTFVKELTL DVKNVIAPPK TKSSLVREKA SSLAEHDSGK SSADADTDAK IDKLSNHVQA REVGDMESAH GHQQTARSPT DSPSRSNAVE SPSKEVQESM
0801: YGKDVSFDGS PHGAQRKETS FDGSPNAAQS EHWGTESVFS RDKGFDGSGW GTFDTNFDTD AAWDVNSVAK DSDHDNLKES SLFGDDDWGL APIKTGSKQS
0901: NTLPNQMPSF DSVPSTPSYN AGIDNTFPKQ SPFFDSVPST PSYNAGFSYS DNTFPKQSPF FDSVPSTPSY NSGFTQTDNL FSRQSPFFDS VPSTPAYNSG
1001: GSPNADNMFQ NKSPFAFGDS VPSTPMYSST NSPRRHSGKI
0101: INLAAVAGPR PANRVGSAVP PVSRAAPTEA PSFGIRGQQG LPVPQSQYMR PPRPSVQSTS FPSQSGASSH GMPGGTMAAF SQANSSDWLS GNGGSQAAVT
0201: SQAPNISINS RSQDGFDHAS PQQNQQKTTY SATPGNGFAS DSLFGDAFSV ASVQPKQNSA PSISSAGSFP VSPAIVSASA GLQHPVKASP IVSQVALPQK
0301: PVNQHQQAQL TGRPNKQVLV PSAGANPNAA GNSRSSQSQI PWPRMTRSDY QKYSKVFMAV DSDRDGKISG LEARNLFLSW KLPREVLKQV WDLSDQDNDS
0401: MLSLREFCIA LYLMERHREG HPLPSVLPTN LIFDESLLPA SGQPVPPHGA VAWRHTPATQ QTQGPRVVPG QMASGAPGRP PRPVPIPQPN EVVQPGQQKP
0501: KVPALEKHLV DQLSQEEQDA LSSKFQEATD AEKKVMELEK EILEAKEKIQ FYHAKMQEII LYKSRCDNRL NEITQRTSAD KREVELLAKK YEEKYKQTGD
0601: VASKLTIEEA TFRDIQEKKM ELYKEIVKMD QDGKTDGIQD RASHIQVNLE ELVKSLNERC KTYGLRAKPT TLLELPFGWQ PGIQEVAADW DEEWDKFEDE
0701: GFTFVKELTL DVKNVIAPPK TKSSLVREKA SSLAEHDSGK SSADADTDAK IDKLSNHVQA REVGDMESAH GHQQTARSPT DSPSRSNAVE SPSKEVQESM
0801: YGKDVSFDGS PHGAQRKETS FDGSPNAAQS EHWGTESVFS RDKGFDGSGW GTFDTNFDTD AAWDVNSVAK DSDHDNLKES SLFGDDDWGL APIKTGSKQS
0901: NTLPNQMPSF DSVPSTPSYN AGIDNTFPKQ SPFFDSVPST PSYNAGFSYS DNTFPKQSPF FDSVPSTPSY NSGFTQTDNL FSRQSPFFDS VPSTPAYNSG
1001: GSPNADNMFQ NKSPFAFGDS VPSTPMYSST NSPRRHSGKI
0001: MAAPRPTGGQ DLFDTYFRRA DLDGDGHISG AEAVAFFQGS NLPKHVLAQV WSYADSKKAG YLGRAEFYNA LKLVTVAQSR RELTAEIVKA AIYSPASANI
0101: PAPKINLAAT PSPQPRGVLP ATQAQGVTSM PSVAAGVRGP HMGGTVSTSN QQVVPGQQNQ FTGIPPSQTQ QNFQSPGMPA GGTNAPRPAN QPMPSDWLSG
0201: RSVGPSGNVN SQIPSSQSTY GLTAPNSTAN HITKPHITPA VTSSTTTRPQ ESAPVHNPQE SSATFGSRVS NVPSNQLVPK DPKELAASGN GFTSDSLFGD
0301: VFSVTSTQPK QHPTGSASTT GISSVTTGTV AGPEITQSVV RQSSIPQQGS LSQHAVGVQT QLTGNSGQPY TSSGAASGPP GSTVGVGISA TSQLAQRPPH
0401: PHSQPQPRPQ GQSQPPWPKM TPADVQKYTK VFVQVDTDRD GKITGNQARN LFLSWRLPRD ALKQVWDLSD QDNDSMLSLR EFCIAVYLME RYREGRPLPP
0501: VFPSSIIHSE SMFTSPGQSV APHGNASWGH PQGFQQQPHP GGLRPPAGPK GKPPRPVPLS PSDGMVQPTQ PKRKMPVLEK PLVDQLSKEE QDSLNTKFEE
0601: ATAVDKKVDE LEKEIADSKQ KIDFFRAKMQ ELVLYKSRCD NRYNEIAERV LGDKRELESL AKKYEEKYKK SGNVGSKLTI EEATFRDIQE KKMELYQAIV
0701: KFEEGKLDDS IVKERTEHIQ SGLEELIKNL NERCKQYGVR GKPTSLVELP FGWQPGIQEG AADWDEDWDK LEDEGFTFVK ELTLDIQNVI APPKEKSSAW
0801: RKEVDVSSKE GEDVSFSDAD SKTGKKQSSG EEDSEQSEGK TSDVDARDKN GSLDDSKVRK GIEADSSPRT KDTRSENGHD DGESTASAGK TVNYDSHDET
0901: DSVSSVNPDN GKDKDHGKYD SGFGFGFGFD DFSIKPIKTG STISNDFLPP KLSIFADSVP SPPANASDVS PTKPSLFADS VPSTPATNNA SYPGQKSFFD
1001: DSVPSTPAYP GNLFAEKKSY FDDSVPSTPA YSTSDFGGKP FASETPRSDN LFPGRSPFMF DSVPSTPAAH DDFSNNSFSR FDSFNSNNND AFSLSRTDSM
1101: RSTSEPDPFA SRFDSFNYQR YDSFNAQSYD SSSNNNASET PKASLTRFDS IGSTRDSDYS HGFGFDDHDP FGSTGPFKTT TTTAETPRSS DNWNAF
0101: PAPKINLAAT PSPQPRGVLP ATQAQGVTSM PSVAAGVRGP HMGGTVSTSN QQVVPGQQNQ FTGIPPSQTQ QNFQSPGMPA GGTNAPRPAN QPMPSDWLSG
0201: RSVGPSGNVN SQIPSSQSTY GLTAPNSTAN HITKPHITPA VTSSTTTRPQ ESAPVHNPQE SSATFGSRVS NVPSNQLVPK DPKELAASGN GFTSDSLFGD
0301: VFSVTSTQPK QHPTGSASTT GISSVTTGTV AGPEITQSVV RQSSIPQQGS LSQHAVGVQT QLTGNSGQPY TSSGAASGPP GSTVGVGISA TSQLAQRPPH
0401: PHSQPQPRPQ GQSQPPWPKM TPADVQKYTK VFVQVDTDRD GKITGNQARN LFLSWRLPRD ALKQVWDLSD QDNDSMLSLR EFCIAVYLME RYREGRPLPP
0501: VFPSSIIHSE SMFTSPGQSV APHGNASWGH PQGFQQQPHP GGLRPPAGPK GKPPRPVPLS PSDGMVQPTQ PKRKMPVLEK PLVDQLSKEE QDSLNTKFEE
0601: ATAVDKKVDE LEKEIADSKQ KIDFFRAKMQ ELVLYKSRCD NRYNEIAERV LGDKRELESL AKKYEEKYKK SGNVGSKLTI EEATFRDIQE KKMELYQAIV
0701: KFEEGKLDDS IVKERTEHIQ SGLEELIKNL NERCKQYGVR GKPTSLVELP FGWQPGIQEG AADWDEDWDK LEDEGFTFVK ELTLDIQNVI APPKEKSSAW
0801: RKEVDVSSKE GEDVSFSDAD SKTGKKQSSG EEDSEQSEGK TSDVDARDKN GSLDDSKVRK GIEADSSPRT KDTRSENGHD DGESTASAGK TVNYDSHDET
0901: DSVSSVNPDN GKDKDHGKYD SGFGFGFGFD DFSIKPIKTG STISNDFLPP KLSIFADSVP SPPANASDVS PTKPSLFADS VPSTPATNNA SYPGQKSFFD
1001: DSVPSTPAYP GNLFAEKKSY FDDSVPSTPA YSTSDFGGKP FASETPRSDN LFPGRSPFMF DSVPSTPAAH DDFSNNSFSR FDSFNSNNND AFSLSRTDSM
1101: RSTSEPDPFA SRFDSFNYQR YDSFNAQSYD SSSNNNASET PKASLTRFDS IGSTRDSDYS HGFGFDDHDP FGSTGPFKTT TTTAETPRSS DNWNAF
Arabidopsis Description
Calcium-binding EF hand family protein [Source:UniProtKB/TrEMBL;Acc:F4HY32]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.