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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_03s0038g03870.t01 Wine grape cytosol 44.62 50.99
KRH14013 Soybean endoplasmic reticulum 46.54 46.67
KRH74101 Soybean endoplasmic reticulum 36.92 44.76
CDY38814 Canola cytosol 46.44 42.22
CDY08192 Canola cytosol 47.21 42.22
CDY04654 Canola cytosol 47.4 41.89
CDY00394 Canola cytosol 45.87 41.7
Os06t0728600-00 Rice plasma membrane 35.48 41.28
Bra012288.1-P Field mustard cytosol 44.62 40.95
CDX96582 Canola cytosol 44.81 40.77
CDY01320 Canola cytosol 46.25 40.73
Bra016413.1-P Field mustard cytosol 44.52 40.61
GSMUA_Achr4P11750_001 Banana cytosol 41.44 40.17
Bra017933.1-P Field mustard cytosol 47.31 39.9
AT1G21630.2 Thale cress cytosol 47.69 39.78
GSMUA_Achr8P13420_001 Banana cytosol 35.29 38.55
GSMUA_Achr5P19150_001 Banana endoplasmic reticulum 34.62 38.01
Zm00001d037125_P009 Maize cytosol 42.21 36.34
EER92924 Sorghum cytosol 36.44 36.27
EER89004 Sorghum cytosol 42.69 36.22
Zm00001d014862_P002 Maize cytosol 41.92 36.0
Os03t0130500-01 Rice plasma membrane 36.92 35.96
Zm00001d027503_P036 Maize cytosol 35.38 34.68
TraesCS4B01G324500.1 Wheat cytosol 35.77 34.54
TraesCS4D01G321600.1 Wheat cytosol 35.96 34.34
TraesCS5A01G497000.1 Wheat cytosol 35.77 34.32
Zm00001d048338_P035 Maize cytosol 35.48 34.01
TraesCS7A01G553100.1 Wheat cytosol 41.92 33.69
TraesCS7D01G539600.2 Wheat cytosol 41.73 33.59
TraesCS7B01G476800.3 Wheat cytosol 41.92 33.56
Solyc04g082560.2.1 Tomato cytosol 39.52 33.47
HORVU4Hr1G082280.2 Barley cytosol 36.06 33.16
HORVU7Hr1G121230.4 Barley cytosol 40.77 32.72
Solyc12g014460.1.1 Tomato cytosol 8.94 17.06
Solyc07g064910.2.1 Tomato cytosol 8.94 17.06
Solyc11g012020.1.1 Tomato cytosol 8.56 16.27
Solyc10g006110.2.1 Tomato cytosol 8.37 16.02
Solyc02g082530.1.1 Tomato nucleus 0.38 4.12
Solyc08g069130.1.1 Tomato cytosol 0.0 0.0
Protein Annotations
Gene3D:1.10.238.10MapMan:22.1.4.7ncoils:CoilInterPro:EF-hand-dom_pairInterPro:EF_Hand_1_Ca_BSInterPro:EF_hand_dom
InterPro:EH_domGO:GO:0003674GO:GO:0005488GO:GO:0005509GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0005886GO:GO:0016020
InterPro:IPR000261InterPro:IPR002048UniProt:K4BAC4PFAM:PF12763PFAM:PF13202ScanProsite:PS00018
PFscan:PS50031PFscan:PS50222PANTHER:PTHR11216PANTHER:PTHR11216:SF116SMART:SM00027SMART:SM00054
SUPFAM:SSF47473EnsemblPlantsGene:Solyc02g082540.2EnsemblPlants:Solyc02g082540.2.1UniParc:UPI00027680E7SEG:seg:
Description
No Description!
Coordinates
chr2:-:46202935..46214668
Molecular Weight (calculated)
113618.0 Da
IEP (calculated)
5.965
GRAVY (calculated)
-0.682
Length
1040 amino acids
Sequence
(BLAST)
0001: MAAQNQTDQF EAYFRRADLD QDGRISGVEA VSFFQGSNLP KPVLAQIWTY VDQSRTGFLS RQEFFNYLKL VTVAQKRELT PEIVKAALFT PASAKIPAPQ
0101: INLAAVAGPR PANRVGSAVP PVSRAAPTEA PSFGIRGQQG LPVPQSQYMR PPRPSVQSTS FPSQSGASSH GMPGGTMAAF SQANSSDWLS GNGGSQAAVT
0201: SQAPNISINS RSQDGFDHAS PQQNQQKTTY SATPGNGFAS DSLFGDAFSV ASVQPKQNSA PSISSAGSFP VSPAIVSASA GLQHPVKASP IVSQVALPQK
0301: PVNQHQQAQL TGRPNKQVLV PSAGANPNAA GNSRSSQSQI PWPRMTRSDY QKYSKVFMAV DSDRDGKISG LEARNLFLSW KLPREVLKQV WDLSDQDNDS
0401: MLSLREFCIA LYLMERHREG HPLPSVLPTN LIFDESLLPA SGQPVPPHGA VAWRHTPATQ QTQGPRVVPG QMASGAPGRP PRPVPIPQPN EVVQPGQQKP
0501: KVPALEKHLV DQLSQEEQDA LSSKFQEATD AEKKVMELEK EILEAKEKIQ FYHAKMQEII LYKSRCDNRL NEITQRTSAD KREVELLAKK YEEKYKQTGD
0601: VASKLTIEEA TFRDIQEKKM ELYKEIVKMD QDGKTDGIQD RASHIQVNLE ELVKSLNERC KTYGLRAKPT TLLELPFGWQ PGIQEVAADW DEEWDKFEDE
0701: GFTFVKELTL DVKNVIAPPK TKSSLVREKA SSLAEHDSGK SSADADTDAK IDKLSNHVQA REVGDMESAH GHQQTARSPT DSPSRSNAVE SPSKEVQESM
0801: YGKDVSFDGS PHGAQRKETS FDGSPNAAQS EHWGTESVFS RDKGFDGSGW GTFDTNFDTD AAWDVNSVAK DSDHDNLKES SLFGDDDWGL APIKTGSKQS
0901: NTLPNQMPSF DSVPSTPSYN AGIDNTFPKQ SPFFDSVPST PSYNAGFSYS DNTFPKQSPF FDSVPSTPSY NSGFTQTDNL FSRQSPFFDS VPSTPAYNSG
1001: GSPNADNMFQ NKSPFAFGDS VPSTPMYSST NSPRRHSGKI
Best Arabidopsis Sequence Match ( AT1G21630.3 )
(BLAST)
0001: MAAPRPTGGQ DLFDTYFRRA DLDGDGHISG AEAVAFFQGS NLPKHVLAQV WSYADSKKAG YLGRAEFYNA LKLVTVAQSR RELTAEIVKA AIYSPASANI
0101: PAPKINLAAT PSPQPRGVLP ATQAQGVTSM PSVAAGVRGP HMGGTVSTSN QQVVPGQQNQ FTGIPPSQTQ QNFQSPGMPA GGTNAPRPAN QPMPSDWLSG
0201: RSVGPSGNVN SQIPSSQSTY GLTAPNSTAN HITKPHITPA VTSSTTTRPQ ESAPVHNPQE SSATFGSRVS NVPSNQLVPK DPKELAASGN GFTSDSLFGD
0301: VFSVTSTQPK QHPTGSASTT GISSVTTGTV AGPEITQSVV RQSSIPQQGS LSQHAVGVQT QLTGNSGQPY TSSGAASGPP GSTVGVGISA TSQLAQRPPH
0401: PHSQPQPRPQ GQSQPPWPKM TPADVQKYTK VFVQVDTDRD GKITGNQARN LFLSWRLPRD ALKQVWDLSD QDNDSMLSLR EFCIAVYLME RYREGRPLPP
0501: VFPSSIIHSE SMFTSPGQSV APHGNASWGH PQGFQQQPHP GGLRPPAGPK GKPPRPVPLS PSDGMVQPTQ PKRKMPVLEK PLVDQLSKEE QDSLNTKFEE
0601: ATAVDKKVDE LEKEIADSKQ KIDFFRAKMQ ELVLYKSRCD NRYNEIAERV LGDKRELESL AKKYEEKYKK SGNVGSKLTI EEATFRDIQE KKMELYQAIV
0701: KFEEGKLDDS IVKERTEHIQ SGLEELIKNL NERCKQYGVR GKPTSLVELP FGWQPGIQEG AADWDEDWDK LEDEGFTFVK ELTLDIQNVI APPKEKSSAW
0801: RKEVDVSSKE GEDVSFSDAD SKTGKKQSSG EEDSEQSEGK TSDVDARDKN GSLDDSKVRK GIEADSSPRT KDTRSENGHD DGESTASAGK TVNYDSHDET
0901: DSVSSVNPDN GKDKDHGKYD SGFGFGFGFD DFSIKPIKTG STISNDFLPP KLSIFADSVP SPPANASDVS PTKPSLFADS VPSTPATNNA SYPGQKSFFD
1001: DSVPSTPAYP GNLFAEKKSY FDDSVPSTPA YSTSDFGGKP FASETPRSDN LFPGRSPFMF DSVPSTPAAH DDFSNNSFSR FDSFNSNNND AFSLSRTDSM
1101: RSTSEPDPFA SRFDSFNYQR YDSFNAQSYD SSSNNNASET PKASLTRFDS IGSTRDSDYS HGFGFDDHDP FGSTGPFKTT TTTAETPRSS DNWNAF
Arabidopsis Description
Calcium-binding EF hand family protein [Source:UniProtKB/TrEMBL;Acc:F4HY32]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.