CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14013	Soybean	endoplasmic reticulum	94.64	78.3
VIT_03s0038g03870.t01	Wine grape	cytosol	54.08	50.99
GSMUA_Achr8P13420_001	Banana	cytosol	44.87	40.44
GSMUA_Achr5P19150_001	Banana	endoplasmic reticulum	42.42	38.44
Solyc02g082540.2.1	Tomato	nucleus	44.76	36.92
KRH60909	Soybean	endoplasmic reticulum	44.29	35.78
GSMUA_Achr4P11750_001	Banana	cytosol	44.41	35.51
KRH51589	Soybean	endoplasmic reticulum	43.59	34.76
Os06t0728600-00	Rice	plasma membrane	35.2	33.78
EER92924	Sorghum	cytosol	39.74	32.63
Os03t0130500-01	Rice	plasma membrane	40.33	32.4
TraesCS4D01G321600.1	Wheat	cytosol	39.63	31.22
TraesCS4B01G324500.1	Wheat	cytosol	38.69	30.83
TraesCS5A01G497000.1	Wheat	cytosol	38.93	30.81
HORVU4Hr1G082280.2	Barley	cytosol	39.39	29.89
EER89004	Sorghum	cytosol	41.26	28.87
Zm00001d027503_P036	Maize	cytosol	35.55	28.75
Zm00001d048338_P035	Maize	cytosol	36.25	28.66
Zm00001d037125_P009	Maize	cytosol	40.21	28.56
Zm00001d014862_P002	Maize	cytosol	40.21	28.49
TraesCS7B01G476800.3	Wheat	cytosol	41.26	27.25
TraesCS7D01G539600.2	Wheat	cytosol	41.03	27.24
TraesCS7A01G553100.1	Wheat	cytosol	40.79	27.05
HORVU7Hr1G121230.4	Barley	cytosol	40.68	26.93
KRH73798	Soybean	cytosol	8.62	13.48
KRH51151	Soybean	cytosol	8.28	13.03
KRH02006	Soybean	cytosol	8.04	12.66
KRH36524	Soybean	cytosol	7.93	12.62
KRH11510	Soybean	cytosol	7.93	12.62
KRG98685	Soybean	cytosol	7.81	12.38
KRH74100	Soybean	cytosol	1.4	9.02
KRH45544	Soybean	cytosol	2.21	8.12

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100793159	MapMan:22.1.4.7	EMBL:ACUP02001296	ncoils:Coil	InterPro:EF-hand-dom_pair
InterPro:EF_hand_dom	InterPro:EH_dom	EnsemblPlantsGene:GLYMA_02G311300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
GO:GO:0005515	InterPro:IPR000261	InterPro:IPR002048	UniProt:K7KBT7	EnsemblPlants:KRH74101	ProteinID:KRH74101
ProteinID:KRH74101.1	PFAM:PF12763	PFscan:PS50031	PFscan:PS50222	PANTHER:PTHR11216	PANTHER:PTHR11216:SF116
SMART:SM00027	SUPFAM:SSF47473	UniParc:UPI000295F84A	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:48469994..48489186

Molecular Weight (calculated)

94387.4 Da

IEP (calculated)

4.661

GRAVY (calculated)

-0.772

Length

858 amino acids

Sequence
(BLAST)

001: MALPETPGIS SYGKVGGTPE VTSSPVAVRG TSPPSMEEGF GFGSNVARPP GTYPASPIKY SDQMVKDSKP VDTSVNGNSS DSFFGGDLFS ASSFQPKQAS
101: SPQGFSSGTS ALSSAIVPVS GGNQHSTRTS PPDSLQHSLA VQPVGAQLQQ AQPVVKQDQH ASVQTHNMPN SFRLPGRLQD SASSQPQAPW PRMTQTDVQK
201: YMKVFLEVDT DRDGKITGEQ ARNLFLSWRL PREVLQQVWD LSDQDNDSML SLREFCIALY LMERHREGRV LPAVLPSNIV LDLPTTGQPA ANYSTWGNPS
301: GFQQQPGITG SSARQVNPAA GRPPRPAAVS QSDEGPPNKP QKSRIPVLEK HLINQLSSDE QNSINSKFQE ATEADKKVEE LEKEIMESRE KIEFYRAKMQ
401: ELVLYKSRCD NRLNEVIERI AADKHEVEIL AKKYEDKYKQ VGDLSSKLTT EEATFRDIQE KKIELYQAIV KMEQDGKGDA TLQAHVDRIQ TDLDELVTSL
501: NERCKKYGLH AKPTTLLELP FGWQPGIQEG AADWDEDWDK LEDKEFVFVK ELTLDVQNII APPKQKLLSA VNTKALNTEA LNTEAVNTDS PTFAASPKSD
601: DKSKKPQTTN EQGVGNGSVY NKSEDGSVKS APNSPFASSA IGSPHGDFDS NIRKTAGEDS SPRDQDTIQE TQSDHGGVQS VFSGDKNFDE PNWGTFDTND
701: DIDSVWGFNA SSFTKEEREL DRAGNNYFFD SGELGLNPIK TGSPQAGDPF QRSSGFSFDD SVPSTPLFSS SSSPQRPKEW LETAFDFSRF DSFRTHDSVP
801: LPARETTEQF DSVRNSADFD HAHGFPAFDD SDPFGSGPFR TSSDNQTPRR GSDNWSAF

Best Arabidopsis Sequence Match ( AT1G21630.3 )
(BLAST)

0001: MAAPRPTGGQ DLFDTYFRRA DLDGDGHISG AEAVAFFQGS NLPKHVLAQV WSYADSKKAG YLGRAEFYNA LKLVTVAQSR RELTAEIVKA AIYSPASANI
0101: PAPKINLAAT PSPQPRGVLP ATQAQGVTSM PSVAAGVRGP HMGGTVSTSN QQVVPGQQNQ FTGIPPSQTQ QNFQSPGMPA GGTNAPRPAN QPMPSDWLSG
0201: RSVGPSGNVN SQIPSSQSTY GLTAPNSTAN HITKPHITPA VTSSTTTRPQ ESAPVHNPQE SSATFGSRVS NVPSNQLVPK DPKELAASGN GFTSDSLFGD
0301: VFSVTSTQPK QHPTGSASTT GISSVTTGTV AGPEITQSVV RQSSIPQQGS LSQHAVGVQT QLTGNSGQPY TSSGAASGPP GSTVGVGISA TSQLAQRPPH
0401: PHSQPQPRPQ GQSQPPWPKM TPADVQKYTK VFVQVDTDRD GKITGNQARN LFLSWRLPRD ALKQVWDLSD QDNDSMLSLR EFCIAVYLME RYREGRPLPP
0501: VFPSSIIHSE SMFTSPGQSV APHGNASWGH PQGFQQQPHP GGLRPPAGPK GKPPRPVPLS PSDGMVQPTQ PKRKMPVLEK PLVDQLSKEE QDSLNTKFEE
0601: ATAVDKKVDE LEKEIADSKQ KIDFFRAKMQ ELVLYKSRCD NRYNEIAERV LGDKRELESL AKKYEEKYKK SGNVGSKLTI EEATFRDIQE KKMELYQAIV
0701: KFEEGKLDDS IVKERTEHIQ SGLEELIKNL NERCKQYGVR GKPTSLVELP FGWQPGIQEG AADWDEDWDK LEDEGFTFVK ELTLDIQNVI APPKEKSSAW
0801: RKEVDVSSKE GEDVSFSDAD SKTGKKQSSG EEDSEQSEGK TSDVDARDKN GSLDDSKVRK GIEADSSPRT KDTRSENGHD DGESTASAGK TVNYDSHDET
0901: DSVSSVNPDN GKDKDHGKYD SGFGFGFGFD DFSIKPIKTG STISNDFLPP KLSIFADSVP SPPANASDVS PTKPSLFADS VPSTPATNNA SYPGQKSFFD
1001: DSVPSTPAYP GNLFAEKKSY FDDSVPSTPA YSTSDFGGKP FASETPRSDN LFPGRSPFMF DSVPSTPAAH DDFSNNSFSR FDSFNSNNND AFSLSRTDSM
1101: RSTSEPDPFA SRFDSFNYQR YDSFNAQSYD SSSNNNASET PKASLTRFDS IGSTRDSDYS HGFGFDDHDP FGSTGPFKTT TTTAETPRSS DNWNAF

Arabidopsis Description

Calcium-binding EF hand family protein [Source:UniProtKB/TrEMBL;Acc:F4HY32]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.