Factsheet for Bra029698.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35984	Canola	cytosol	98.99	91.16
Bra034166.1-P	Field mustard	cytosol	85.13	86.95
Bra034864.1-P	Field mustard	cytosol	86.21	85.69
Bra001391.1-P	Field mustard	cytosol	82.83	84.37
Bra001286.1-P	Field mustard	cytosol	83.57	83.29
Os11t0104900-00	Rice	plasma membrane	38.54	81.55
Os12t0104766-00	Rice	plasma membrane	29.68	75.95
Os11t0104866-00	Rice	plasma membrane	29.48	75.43
KRG97711	Soybean	endoplasmic reticulum, nucleus	84.72	73.71
KRH31163	Soybean	endoplasmic reticulum	84.65	73.65
Solyc06g051310.2.1	Tomato	nucleus	84.58	73.55
Solyc05g052510.2.1	Tomato	nucleus, plastid	84.65	73.39
KRH14933	Soybean	nucleus	84.04	73.12
KRH73205	Soybean	nucleus	84.18	72.94
Solyc03g096000.2.1	Tomato	nucleus	83.71	72.74
EES07849	Sorghum	plastid	83.16	71.97
KXG22761	Sorghum	plastid	83.1	71.87
TraesCS5D01G158800.1	Wheat	plastid	82.96	71.84
TraesCS5B01G152300.1	Wheat	unclear	82.89	71.78
TraesCS5A01G153500.1	Wheat	golgi, unclear	82.89	71.78
TraesCS4A01G182300.1	Wheat	extracellular, golgi	83.03	71.6
TraesCS4D01G130900.1	Wheat	golgi, unclear	82.89	71.49
TraesCS4B01G136100.2	Wheat	golgi, unclear	82.89	70.79
HORVU4Hr1G024710.4	Barley	plastid	82.76	68.73
HORVU5Hr1G048010.1	Barley	plastid	82.69	67.83
Os12t0104800-01	Rice	cytosol	4.87	59.02
VIT_03s0017g00210.t01	Wine grape	cytosol, extracellular	2.1	58.49
VIT_16s0115g00130.t01	Wine grape	cytosol	4.26	54.31
Zm00001d021067_P001	Maize	cytosol, mitochondrion	14.54	48.53
VIT_19s0027g01340.t01	Wine grape	cytosol	8.99	43.32

Protein Annotations

Gene3D:1.25.40.10	Gene3D:1.25.40.730	Gene3D:2.130.10.110	MapMan:22.1.1.1	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra029698
EnsemblPlants:Bra029698.1	EnsemblPlants:Bra029698.1-P	InterPro:Clathrin_H-chain/VPS_repeat	InterPro:Clathrin_H-chain_N	InterPro:Clathrin_H-chain_linker_core	InterPro:Clathrin_H-chain_propeller_rpt
InterPro:Clathrin_heavy_chain	ncoils:Coil	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005829
GO:GO:0005886	GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0006897	GO:GO:0008150
GO:GO:0009506	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0016192	GO:GO:0030130	GO:GO:0030132	GO:GO:0030659	GO:GO:0031410	GO:GO:0032051
GO:GO:0042802	GO:GO:0048268	GO:GO:0071439	InterPro:IPR000547	InterPro:IPR011990	InterPro:IPR016025
UniProt:M4ELN0	PFAM:PF00637	PFAM:PF01394	PFAM:PF09268	PFAM:PF13838	PIRSF:PIRSF002290
PFscan:PS50236	PANTHER:PTHR10292	PANTHER:PTHR10292:SF1	SMART:SM00299	SUPFAM:SSF48371	SUPFAM:SSF50989
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002547DE6	SEG:seg	:	:	:

Description

AT3G08530 (E=0.0) | clathrin heavy chain, putative

Coordinates

chrA05:+:22604040..22612001

Molecular Weight (calculated)

166905.0 Da

IEP (calculated)

5.015

GRAVY (calculated)

-0.095

Length

1479 amino acids

Sequence
(BLAST)

0001: MAVANAPITL KEVLTLPSVG INQQFITFTN VTMESDKYIC VRETSPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSRIL ALKAQVPGTT QDYLQMFNIE
0101: AKAKLKSHQM PDQVEFWKWI TPKMLGLVTQ YSVYHWSIEG DSEPVKMFDR ATKLENNQII NYKCSPNEKW LVLIGITPGP PERPQLVKGN MQLFSVDQQQ
0201: TQSLDAHAAS FAQFKVPGNE NPSTLISFAT KSFNAGQITS NVHVIELGAL PGKASFAKKK ADLSFLPDFA DDFPVAMQIS NKFSLIYVIT KLGLLFVYDL
0301: ETASPIYRNR ISTDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGPLKNLEL AVNLAKRGNL PGADDLVVKR FKELFDQTKY KEAAELAAES
0401: PQGILRTPDT VSKFQSVPVQ AGQTPPLLQY FGTLLTKGKL NSYESLELSR LVVKYTPDYL FLLQTILRTD PQGAGEFAVK MSQMKGGCPL DINTITDLFL
0501: QRNLVREATA FLLDVLKPNL PEHAFLQTKV LEINLVTFPN VAEAILAGSM FSHYDRPRVA QLCEKAGLYI QSLKALVDFL GTLSSDWAME CMKELLIVNP
0601: RGNLQIIVQD PEVHFKYIEA SAKTGQLKEV ERVTRESNFY DAEKTKNFLM EAKLPDARPL INVCDRFGFV PDLTHYLYIN NMLRYIEGYV QKVNPGSAPL
0701: VVGQLLDDEC PEDFIKGLII SVRSLLPVET LVEECEKRNR LRLLTQFLEH LVTEGSQDVH VHNALGKIII DSNNNPEQQV SSAVKAFMTA DLPHELIELL
0801: EKIVLQNSDF SGNVNLQNLL ILTAVKADSS RVMDYVNRLE NFDGPVVGEM AVEAQLFEEA FAIFKKFNLN VEAVNVLLDN VKSIERAAEF ALRVEEDSVW
0901: SQVAKAQLRE GLVSEAIESF IRAEDATHFL EVIRVAEDAN VYDDMVSYLL MVRNKVKEVK VDSELLYAYA KIGRLGEVED FILMPNVANL QNVGDRMYDE
1001: AMYEAAKIVY AFVSNWGKLA VTLVKLQQFQ GAVDAARKAS NAKTWKEVCF ACVDAEEFRL AQICGLNIII QVDDLEEVSE FYQNKGFFNE LISLMESGLG
1101: LERAHMGIFT ELGVLYARYR YEKLIEHIKL FSTRLNIPKL IRACDEQQHW QELTYLYIQY AEFDNAATTV MNHSPEAWEH VQFKDIVGKV ANVEVYYKAV
1201: HFYLLEHPDI INDLLNVLAL RLDHTRVVDI MRKAGHLRLI KPYMVAVQSN NVTAVNEALN EIYVEEEDYE RLRESIDLHD SFDQIGLAQK IEKHELVEMR
1301: RVAAYIYKKA GKWKQSIALS KKDNLYKDCM ETASQSGDHD LAEQLLVYFI EQGKKESFAT CLFVCYDLIR PDVALELAWI NNIIDLAFPY LLQVMREYTG
1401: KVDEIIKDKL EAQKEAKAKE QEEKEVMSQQ NMYAQLLPNA LPAPSMLLAL PAPPMQMGGM PPMPMGGMPP FGMPPMGGY

Best Arabidopsis Sequence Match ( AT3G08530.1 )
(BLAST)

0001: MAAANAPITM KEVLTLPSIG INQQFITFTN VTMESDKYIC VRETSPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSKIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVVFWKWI TPKMLGLVTQ NSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERQQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGSPVDY NTITDLFLQR NLIREATSFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAVLANGMFT HYDRPRIAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFSFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW DKVLDENNDY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDS VWSQVAKAQL REGLVSDAIE SFIRADDATH FLEVIRVSED TDVYDDLVKY LLMVRQKVKE PKVDSELIYA YAKIDRLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWGK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMIAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGE HELAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMMDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVIS QQNMYAQMLP LALPAPPMPG MGGGGGYGPP PQMGGMPGMP PMPPYGMPPM
1701: GGY

Arabidopsis Description

CHC2Clathrin heavy chain 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WLB5]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.