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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plastid 2
  • cytosol 2
  • mitochondrion 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os12t0104800-01 Rice cytosol 33.99 70.49
Os11t0104900-00 Rice plasma membrane 77.47 28.04
CDY08549 Canola cytosol 97.63 15.99
CDY36301 Canola cytosol 97.63 14.7
CDY00724 Canola cytosol 97.23 14.64
CDX73889 Canola cytosol 97.23 14.62
CDY00997 Canola extracellular 97.63 14.47
CDX74011 Canola cytosol 94.47 14.24
CDY07954 Canola cytosol 93.28 14.09
CDY27997 Canola cytosol 82.61 13.06
KRH73205 Soybean nucleus 85.77 12.71
CDY35984 Canola cytosol 80.63 12.7
KRG97711 Soybean endoplasmic reticulum, nucleus 84.58 12.59
KRH31163 Soybean endoplasmic reticulum 84.58 12.59
KRH14933 Soybean nucleus 83.79 12.47
KXG22761 Sorghum plastid 80.24 11.87
EES07849 Sorghum plastid 79.84 11.82
TraesCS4A01G182300.1 Wheat extracellular, golgi 79.84 11.78
TraesCS4D01G130900.1 Wheat golgi, unclear 79.84 11.78
TraesCS4B01G136100.2 Wheat golgi, unclear 80.24 11.72
TraesCS5D01G158800.1 Wheat plastid 79.05 11.71
TraesCS5A01G153500.1 Wheat golgi, unclear 79.05 11.71
TraesCS5B01G152300.1 Wheat unclear 78.66 11.65
HORVU4Hr1G024710.4 Barley plastid 79.84 11.34
HORVU5Hr1G048010.1 Barley plastid 78.26 10.98
CDY06504 Canola extracellular, mitochondrion 3.56 9.57
CDY22157 Canola cytosol 0.79 2.56
VIT_03s0017g00210.t01 Wine grape cytosol, extracellular 0.4 1.89
Os12t0104766-00 Rice plasma membrane 3.16 1.38
Os11t0104866-00 Rice plasma membrane 1.58 0.69
CDY36318 Canola cytosol 1.58 0.54
CDY22158 Canola cytosol 0.0 0.0
Protein Annotations
Gene3D:1.25.40.10Gene3D:1.25.40.730MapMan:35.1GO:A0A078HEW2UniProt:A0A078HEW2InterPro:ARM-type_fold
EnsemblPlants:CDY36317ProteinID:CDY36317ProteinID:CDY36317.1InterPro:Clathrin_H-chain/VPS_repeatncoils:CoilGO:GO:0003674
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0006810
GO:GO:0006886GO:GO:0008150GO:GO:0016192EnsemblPlantsGene:GSBRNA2T00060294001InterPro:IPR000547InterPro:IPR011990
PFAM:PF00637PFscan:PS50236PANTHER:PTHR10292PANTHER:PTHR10292:SF1SMART:SM00299SUPFAM:SSF48371
InterPro:TPR-like_helical_dom_sfUniParc:UPI0004EEF95CSEG:seg:::
Description
BnaA01g31010DBnaA01g31010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HEW2]
Coordinates
chrLK032372:-:319598..321068
Molecular Weight (calculated)
28503.5 Da
IEP (calculated)
4.643
GRAVY (calculated)
-0.372
Length
253 amino acids
Sequence
(BLAST)
001: MQLSHLSVKP YMVAVQSNNV SAVNEALNEI YVEEEDYDRL RESIDLHDSF DQIGLAQKIE KHELVEMRRV AAYIYKKAGR WKQSIALSKK DNMYKDCMET
101: ASQSGDHDLA EQLLVYFIEQ GKKECFATCL FVCYDLIRPD VALELAWINN MIDFAFPYLL QFIREYSGKV DELIKDKLEA QKEVKAKEQE EKDVMSQQNM
201: YAQLLPLALP APPMPGMGGG PGMGGGYGPP PQMGGMPGMP PMPPYGMPPM GGY
Best Arabidopsis Sequence Match ( AT3G08530.1 )
(BLAST)
0001: MAAANAPITM KEVLTLPSIG INQQFITFTN VTMESDKYIC VRETSPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSKIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVVFWKWI TPKMLGLVTQ NSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERQQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGSPVDY NTITDLFLQR NLIREATSFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAVLANGMFT HYDRPRIAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFSFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW DKVLDENNDY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDS VWSQVAKAQL REGLVSDAIE SFIRADDATH FLEVIRVSED TDVYDDLVKY LLMVRQKVKE PKVDSELIYA YAKIDRLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWGK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMIAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGE HELAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMMDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVIS QQNMYAQMLP LALPAPPMPG MGGGGGYGPP PQMGGMPGMP PMPPYGMPPM
1701: GGY
Arabidopsis Description
CHC2Clathrin heavy chain 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WLB5]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.