Factsheet for Os10t0441800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0141100-02
Os01t0141300-00
Os01t0579600-01
Os01t0711500-00
Os02t0159900-01
Os04t0457800-01
Os06t0225300-01
Os08t0174700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54840.1	Os04t0457800-01	AT1G71830.1	16621602
AT3G54840.1	Os06t0225300-01	AT1G71830.1	16621602
AT3G54840.1	Os08t0174700-01	AT1G71830.1	16621602
AT3G54840.1	Os01t0141100-02	AT2G27600.1	17468262
AT3G54840.1	Os01t0141300-00	AT2G27600.1	17468262
AT3G54840.1	Os02t0159900-01	AT2G27600.1	17468262
AT3G54840.1	Os01t0579600-01	AT4G33000.1	17825054
AT3G54840.1	Os01t0711500-00	AT4G33000.1	17825054

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G140700.1	Wheat	cytosol	55.2	90.2
TraesCS1B01G157100.1	Wheat	cytosol, plastid	70.0	87.5
TraesCS1D01G139500.1	Wheat	cytosol, plastid	69.6	87.0
Os03t0151900-01	Rice	plasma membrane	68.8	86.43
GSMUA_Achr1P03160_001	Banana	cytosol	59.6	84.66
VIT_13s0019g04680.t01	Wine grape	cytosol	66.8	83.5
KRG91957	Soybean	cytosol	64.0	80.0
AT3G54840.1	Thale cress	cytosol	64.0	79.21
Bra014785.1-P	Field mustard	cytosol, plastid	62.8	78.89
GSMUA_Achr5P10670_001	Banana	cytosol	60.8	78.76
Solyc11g008430.1.1	Tomato	cytosol	62.8	78.5
PGSC0003DMT400019238	Potato	cytosol	62.8	78.5
CDY55834	Canola	cytosol, plastid	63.2	77.83
CDX78272	Canola	cytosol	62.8	77.34
CDY61658	Canola	cytosol	61.2	75.74
KRH34819	Soybean	cytosol	61.2	74.63
GSMUA_Achr4P29310_001	Banana	plastid	63.2	72.15
Bra007104.1-P	Field mustard	endoplasmic reticulum	62.4	56.12
Os12t0631100-01	Rice	plasma membrane	42.0	51.72
Os03t0666500-01	Rice	plasma membrane	41.6	51.23
CDY02896	Canola	endoplasmic reticulum, golgi	54.8	50.93
Os06t0687100-01	Rice	cytosol	38.0	47.5
Os07t0496000-01	Rice	plasma membrane	30.8	37.02
Os05t0341600-01	Rice	cytosol, plastid	30.0	35.38
Os03t0191400-01	Rice	plasma membrane	30.0	34.88

Protein Annotations

MapMan:22.8.1.6	Gene3D:3.40.50.300	EntrezGene:4348725	ProteinID:ABB47704.1	EMBL:AK060324	EMBL:AK070200
ProteinID:BAF26606.1	ProteinID:BAT11038.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:Os10g0441800	EnsemblPlants:Os10t0441800-01	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF618	UniProt:Q337T4
SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI00005E1ED8	RefSeq:XP_015614942.1	SEG:seg	:	:

Description

small GTP-binding protein OsRab5A2Similar to RAB5B. (Os10t0441800-01)

Coordinates

chr10:+:15869292..15873541

Molecular Weight (calculated)

27102.3 Da

IEP (calculated)

7.555

GRAVY (calculated)

-0.289

Length

250 amino acids

Sequence
(BLAST)

001: MLRVPEQLSH RSSCNLRAET HLHPVAGLPP PPPPLALLRL TRPPAPPDPP AMGCSSSLPA NNAGGVGTIS NENSGTDLKN LRVKLVLLGD SGVGKSCIVL
101: RFVRGQFDPT SKVTVGASFL SQTLALEDST TVKFEIWDTA GQERYAALAP LYYRGAGAAI VVYDITSSES FNKAQYWVKE LQKHGSPDMI MALVGNKADL
201: HDNRSVSSQD AQEYAERNTM FFIETSAKTA DNINQLFEEI AKRLPRPTPS

Best Arabidopsis Sequence Match ( AT3G54840.1 )
(BLAST)

001: MGCASSLPDR NSGTLSGLSN SENAVPADAK NLRVKLVLLG DSGVGKSCIV LRFVRGQFDA TSKVTVGASF LSQTIALQDS TTVKFEIWDT AGQERYSALA
101: PLYYRGAGVA VIVYDITSPE SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT ADNINQLFEE IGKRLPRPAP
201: SS

Arabidopsis Description

RABF1Ras-related protein RABF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CB01]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.