Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g072570.2.1 | |
| Solyc08g065330.2.1 | |
| Solyc11g007170.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54840.1 | Solyc04g072570.2.1 | AT1G71830.1 | 16621602 |
| AT3G54840.1 | Solyc11g007170.1.1 | AT2G27600.1 | 17468262 |
| AT3G54840.1 | Solyc08g065330.2.1 | AT4G33000.1 | 17825054 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400019238 | Potato | cytosol | 98.5 | 98.5 |
| VIT_13s0019g04680.t01 | Wine grape | cytosol | 90.5 | 90.5 |
| KRG91957 | Soybean | cytosol | 86.5 | 86.5 |
| AT3G54840.1 | Thale cress | cytosol | 86.0 | 85.15 |
| GSMUA_Achr1P03160_001 | Banana | cytosol | 74.5 | 84.66 |
| TraesCS4D01G267900.1 | Wheat | cytosol | 70.5 | 84.43 |
| Bra014785.1-P | Field mustard | cytosol, plastid | 83.5 | 83.92 |
| TraesCS1A01G140700.1 | Wheat | cytosol | 64.0 | 83.66 |
| CDY61658 | Canola | cytosol | 83.0 | 82.18 |
| KRH34819 | Soybean | cytosol | 84.0 | 81.95 |
| CDY55834 | Canola | cytosol, plastid | 82.0 | 80.79 |
| CDX78272 | Canola | cytosol | 81.5 | 80.3 |
| OQU93218 | Sorghum | plastid | 79.5 | 79.5 |
| Os03t0151900-01 | Rice | plasma membrane | 79.0 | 79.4 |
| GSMUA_Achr5P10670_001 | Banana | cytosol | 74.5 | 77.2 |
| TraesCS1B01G157100.1 | Wheat | cytosol, plastid | 77.0 | 77.0 |
| TraesCS4B01G268600.1 | Wheat | plastid | 76.5 | 76.88 |
| TraesCS4A01G035800.1 | Wheat | plastid | 76.5 | 76.88 |
| TraesCS1D01G139500.1 | Wheat | cytosol, plastid | 76.0 | 76.0 |
| Zm00001d048410_P004 | Maize | plastid | 76.0 | 71.7 |
| GSMUA_Achr4P29310_001 | Banana | plastid | 78.0 | 71.23 |
| Os10t0441800-01 | Rice | plasma membrane | 78.5 | 62.8 |
| HORVU4Hr1G072020.1 | Barley | cytosol | 76.5 | 58.85 |
| Bra007104.1-P | Field mustard | endoplasmic reticulum | 80.5 | 57.91 |
| Solyc02g069370.2.1 | Tomato | plastid | 54.5 | 54.5 |
| Solyc02g036450.2.1 | Tomato | cytosol, plastid | 54.5 | 54.5 |
| CDY02896 | Canola | endoplasmic reticulum, golgi | 72.5 | 53.9 |
| Solyc02g081380.2.1 | Tomato | plastid | 52.5 | 52.5 |
| Solyc01g088560.2.1 | Tomato | plastid | 40.5 | 38.94 |
| Solyc03g078570.2.1 | Tomato | cytosol | 39.0 | 37.68 |
| Solyc05g051570.2.1 | Tomato | nucleus | 38.5 | 37.2 |
Protein Annotations
| MapMan:22.8.1.6 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0016787 | UniProt:K4D5A3 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 |
| PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF618 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 |
| SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | EnsemblPlantsGene:Solyc11g008430.1 | EnsemblPlants:Solyc11g008430.1.1 | TIGRFAMs:TIGR00231 |
| UniParc:UPI000276A8D6 | SEG:seg | : | : | : | : |
Description
Ras-related protein RABF1 [Source:Projected from Arabidopsis thaliana (AT3G54840) UniProtKB/Swiss-Prot;Acc:Q9CB01]
Coordinates
chr11:-:2614324..2620969
Molecular Weight (calculated)
21570.6 Da
IEP (calculated)
5.986
GRAVY (calculated)
-0.191
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCASSAADR NSGRAAGLNP DNGGAYDPKN LKVKLVLLGD SGVGKSCIVL RFVRGQFDPT SKVTVGASFL SQTIALQDST TVKFEIWDTA GQERYAALAP
101: LYYRGAAVAV VVYDITSPES FAKAQYWVKE LQKHGSPDIV MALVGNKADL DEKREVTTQD GIDCAEKNGM FFIETSAKTA DNINQLFEEI AKRLPRPTVA
101: LYYRGAAVAV VVYDITSPES FAKAQYWVKE LQKHGSPDIV MALVGNKADL DEKREVTTQD GIDCAEKNGM FFIETSAKTA DNINQLFEEI AKRLPRPTVA
001: MGCASSLPDR NSGTLSGLSN SENAVPADAK NLRVKLVLLG DSGVGKSCIV LRFVRGQFDA TSKVTVGASF LSQTIALQDS TTVKFEIWDT AGQERYSALA
101: PLYYRGAGVA VIVYDITSPE SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT ADNINQLFEE IGKRLPRPAP
201: SS
101: PLYYRGAGVA VIVYDITSPE SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT ADNINQLFEE IGKRLPRPAP
201: SS
Arabidopsis Description
RABF1Ras-related protein RABF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CB01]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.