Factsheet for Solyc01g088560.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
golgi 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
plastid: 26371478
unclear: 26455813

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004322	Potato	cytosol	99.04	99.04
KRH28235	Soybean	cytosol	94.71	95.17
KRH77258	Soybean	endoplasmic reticulum	94.71	95.17
VIT_02s0012g00710.t01	Wine grape	cytosol	81.73	94.97
TraesCS2D01G234600.1	Wheat	plastid	94.23	94.23
TraesCS2B01G261200.1	Wheat	cytosol	94.23	94.23
TraesCS2A01G236600.1	Wheat	cytosol	94.23	94.23
Os07t0496000-01	Rice	plasma membrane	94.23	94.23
HORVU2Hr1G050270.2	Barley	cytosol	94.23	94.23
GSMUA_AchrUn_...	Banana	cytosol	93.75	93.75
Zm00001d006433_P001	Maize	plasma membrane	93.27	93.27
EER97251	Sorghum	cytosol	93.27	93.27
GSMUA_Achr5P12680_001	Banana	plasma membrane	92.79	92.79
GSMUA_Achr1P00610_001	Banana	cytosol	79.33	92.18
Solyc03g078570.2.1	Tomato	cytosol	89.42	89.86
Solyc05g051570.2.1	Tomato	nucleus	89.42	89.86
Zm00001d021551_P002	Maize	cytosol	92.79	75.98
CDX81264	Canola	cytosol	73.08	74.51
AT5G64990.2	Thale cress	cytosol	75.0	73.24
Bra037802.1-P	Field mustard	cytosol	67.79	71.57
CDY18689	Canola	cytosol	73.08	70.05
Solyc11g008430.1.1	Tomato	cytosol	38.94	40.5
Solyc02g069370.2.1	Tomato	plastid	37.98	39.5
Solyc02g036450.2.1	Tomato	cytosol, plastid	37.02	38.5
Solyc02g081380.2.1	Tomato	plastid	36.06	37.5
Zm00001d024612_P011	Maize	mitochondrion	40.38	29.17

Protein Annotations

MapMan:22.8.1.8	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005794	GO:GO:0005829	GO:GO:0006810	GO:GO:0006890	GO:GO:0006891
GO:GO:0008150	GO:GO:0016787	GO:GO:0042147	UniProt:K4AYP6	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF840	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	EnsemblPlantsGene:Solyc01g088560.2
EnsemblPlants:Solyc01g088560.2.1	TIGRFAMs:TIGR00231	UniParc:UPI0002761962	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:83336020..83341655

Molecular Weight (calculated)

23099.7 Da

IEP (calculated)

8.164

GRAVY (calculated)

-0.162

Length

208 amino acids

Sequence
(BLAST)

001: MAPVSALAKY KLVFLGDQSV GKTSIITRFM YDKFDNTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VASRQSFLNT
101: SKWIEEVRTE RGSDVIIVLV GNKTDLVEKR QVSIEEGEAK ARELNVMFIE TSAKAGFNIK PLFRKIAAAL PGMETLSSAK QEDMVDVNLK SSNSNAAQSQ
201: AQSGGCAC

Best Arabidopsis Sequence Match ( AT2G44610.1 )
(BLAST)

001: MAPVSALAKY KLVFLGDQSV GKTSIITRFM YDKFDNTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VASRQSFLNT
101: TKWIDEVRTE RGSDVIVVLV GNKTDLVDKR QVSIEEAEAK ARELNVMFIE TSAKAGFNIK ALFRKIAAAL PGMETLSSTK QEDMVDVNLK SSNANASLAQ
201: QQSGGCSC

Arabidopsis Description

RABH1BRas-related protein RABH1b [Source:UniProtKB/Swiss-Prot;Acc:O80501]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.