Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81264 | Canola | cytosol | 78.87 | 82.35 |
| Bra037802.1-P | Field mustard | cytosol | 73.24 | 79.19 |
| CDY18689 | Canola | cytosol | 79.34 | 77.88 |
| AT5G10260.1 | Thale cress | cytosol | 74.18 | 76.33 |
| VIT_02s0012g00710.t01 | Wine grape | cytosol | 63.85 | 75.98 |
| GSMUA_Achr1P00610_001 | Banana | cytosol | 63.85 | 75.98 |
| PGSC0003DMT400004322 | Potato | cytosol | 73.71 | 75.48 |
| GSMUA_Achr5P12680_001 | Banana | plasma membrane | 73.71 | 75.48 |
| AT2G22290.1 | Thale cress | cytosol | 73.24 | 75.36 |
| TraesCS2A01G236600.1 | Wheat | cytosol | 73.24 | 75.0 |
| Solyc01g088560.2.1 | Tomato | plastid | 73.24 | 75.0 |
| Os07t0496000-01 | Rice | plasma membrane | 73.24 | 75.0 |
| HORVU2Hr1G050270.2 | Barley | cytosol | 73.24 | 75.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 73.24 | 75.0 |
| TraesCS2B01G261200.1 | Wheat | cytosol | 73.24 | 75.0 |
| TraesCS2D01G234600.1 | Wheat | plastid | 73.24 | 75.0 |
| KRH28235 | Soybean | cytosol | 72.77 | 74.88 |
| KRH77258 | Soybean | endoplasmic reticulum | 72.77 | 74.88 |
| EER97251 | Sorghum | cytosol | 72.77 | 74.52 |
| Zm00001d006433_P001 | Maize | plasma membrane | 72.77 | 74.52 |
| AT2G44610.1 | Thale cress | cytosol | 72.3 | 74.04 |
| AT4G39890.1 | Thale cress | cytosol | 68.08 | 67.76 |
| Zm00001d021551_P002 | Maize | cytosol | 72.3 | 60.63 |
| AT3G54840.1 | Thale cress | cytosol | 36.15 | 38.12 |
| AT4G19640.1 | Thale cress | cytosol | 35.68 | 38.0 |
| AT5G45130.2 | Thale cress | endoplasmic reticulum | 34.74 | 35.58 |
| Zm00001d024612_P011 | Maize | mitochondrion | 35.68 | 26.39 |
Protein Annotations
| MapMan:22.8.1.8 | Gene3D:3.40.50.300 | EntrezGene:836623 | ProteinID:AED97980.1 | ArrayExpress:AT5G64990 | EnsemblPlantsGene:AT5G64990 |
| RefSeq:AT5G64990 | TAIR:AT5G64990 | RefSeq:AT5G64990-TAIR-G | EnsemblPlants:AT5G64990.2 | TAIR:AT5G64990.2 | Unigene:At.55701 |
| Symbol:AtRABH1a | UniProt:F4KGG4 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0016787 | RefSeq:NP_001190616.1 | InterPro:P-loop_NTPase | PFAM:PF00071 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007095 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF630 |
| Symbol:RABH1a | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 |
| InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI0001E93144 | : | : |
Description
AtRABH1aRAB GTPase homolog H1A [Source:UniProtKB/TrEMBL;Acc:F4KGG4]
Coordinates
chr5:-:25963401..25964838
Molecular Weight (calculated)
23911.6 Da
IEP (calculated)
8.578
GRAVY (calculated)
-0.254
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDLGKGYKL VFLGDQGVGK TSIITCFMYG KFDTSYQATI GIDFLSKTTR YEDRTFRLQL WYKKLSLGDT AGQERFKSLV PSYIRDSSVA VIVYDVASKQ
101: SFINTSKWIE EVRAERGSYV IIVLVGNKTD LVNKRQVSIE EGENKAREFG ALFMETSAKA GFNIKPLFCK ITSALQGNEA VSWTKQEDLV DVNLKPLMFS
201: SQANHQQESN CSC
101: SFINTSKWIE EVRAERGSYV IIVLVGNKTD LVNKRQVSIE EGENKAREFG ALFMETSAKA GFNIKPLFCK ITSALQGNEA VSWTKQEDLV DVNLKPLMFS
201: SQANHQQESN CSC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.