Factsheet for PGSC0003DMT400004322

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g088560.2.1	Tomato	plastid	99.04	99.04
VIT_02s0012g00710.t01	Wine grape	cytosol	82.69	96.09
KRH77258	Soybean	endoplasmic reticulum	94.23	94.69
KRH28235	Soybean	cytosol	94.23	94.69
TraesCS2B01G261200.1	Wheat	cytosol	94.23	94.23
TraesCS2A01G236600.1	Wheat	cytosol	94.23	94.23
TraesCS2D01G234600.1	Wheat	plastid	94.23	94.23
Os07t0496000-01	Rice	plasma membrane	94.23	94.23
HORVU2Hr1G050270.2	Barley	cytosol	94.23	94.23
GSMUA_AchrUn_...	Banana	cytosol	93.75	93.75
Zm00001d006433_P001	Maize	plasma membrane	93.27	93.27
EER97251	Sorghum	cytosol	93.27	93.27
GSMUA_Achr5P12680_001	Banana	plasma membrane	92.31	92.31
GSMUA_Achr1P00610_001	Banana	cytosol	78.85	91.62
PGSC0003DMT400018619	Potato	cytosol	90.38	90.82
PGSC0003DMT400056111	Potato	cytosol	89.42	89.86
Zm00001d021551_P002	Maize	cytosol	92.79	75.98
CDX81264	Canola	cytosol	73.08	74.51
AT5G64990.2	Thale cress	cytosol	75.48	73.71
Bra037802.1-P	Field mustard	cytosol	67.79	71.57
CDY18689	Canola	cytosol	73.08	70.05
PGSC0003DMT400019238	Potato	cytosol	38.94	40.5
PGSC0003DMT400055259	Potato	cytosol, plastid	36.54	38.0
PGSC0003DMT400050774	Potato	cytosol	36.06	37.5
Zm00001d024612_P011	Maize	mitochondrion	39.9	28.82

Protein Annotations

EntrezGene:102585175	MapMan:22.8.1.8	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0016787	UniProt:M0ZN87	InterPro:P-loop_NTPase	PFAM:PF00071
EnsemblPlantsGene:PGSC0003DMG400001716	PGSC:PGSC0003DMG400001716	EnsemblPlants:PGSC0003DMT400004322	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF840	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00029583C8	RefSeq:XP_006354635.1	SEG:seg

Description

Nt-rab6 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001716]

Coordinates

chr1:-:68404213..68409952

Molecular Weight (calculated)

23088.6 Da

IEP (calculated)

8.164

GRAVY (calculated)

-0.162

Length

208 amino acids

Sequence
(BLAST)

001: MAPVSALAKY KLVFLGDQSV GKTSIITRFM YDKFDNTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VASRQSFLNT
101: SKWIEEVRTE RGSDVIIVLV GNKTDLVEKR QVSIEEGEAK ARELNVMFIE TSAKAGFNIK PLFRKIAAAL PGMETLSSAK QEDMVDVNLK SSNSSASQSQ
201: AQSGGCAC

Best Arabidopsis Sequence Match ( AT2G44610.1 )
(BLAST)

001: MAPVSALAKY KLVFLGDQSV GKTSIITRFM YDKFDNTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VASRQSFLNT
101: TKWIDEVRTE RGSDVIVVLV GNKTDLVDKR QVSIEEAEAK ARELNVMFIE TSAKAGFNIK ALFRKIAAAL PGMETLSSTK QEDMVDVNLK SSNANASLAQ
201: QQSGGCSC

Arabidopsis Description

RABH1BRas-related protein RABH1b [Source:UniProtKB/Swiss-Prot;Acc:O80501]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.