Factsheet for GSMUA_Achr5P12680_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
golgi 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P00610_001	Banana	cytosol	84.13	97.77
GSMUA_AchrUn_...	Banana	cytosol	95.19	95.19
HORVU2Hr1G050270.2	Barley	cytosol	93.75	93.75
TraesCS2B01G261200.1	Wheat	cytosol	93.75	93.75
TraesCS2D01G234600.1	Wheat	plastid	93.75	93.75
TraesCS2A01G236600.1	Wheat	cytosol	93.75	93.75
Os07t0496000-01	Rice	plasma membrane	93.75	93.75
Zm00001d006433_P001	Maize	plasma membrane	93.27	93.27
EER97251	Sorghum	cytosol	93.27	93.27
CDX74672	Canola	cytosol	92.79	92.79
CDX83425	Canola	cytosol	92.79	92.79
CDX95606	Canola	cytosol	92.79	92.79
Solyc01g088560.2.1	Tomato	plastid	92.79	92.79
CDY30479	Canola	cytosol	92.79	92.79
CDY48241	Canola	cytosol	92.79	92.79
AT2G44610.1	Thale cress	cytosol	92.79	92.79
Bra037641.1-P	Field mustard	cytosol	92.79	92.79
PGSC0003DMT400004322	Potato	cytosol	92.31	92.31
Bra004850.1-P	Field mustard	cytosol	92.31	92.31
Bra000355.1-P	Field mustard	cytosol	91.83	91.83
KRH77258	Soybean	endoplasmic reticulum	91.35	91.79
KRH28235	Soybean	cytosol	91.35	91.79
VIT_15s0021g00640.t01	Wine grape	cytosol	78.85	91.62
KRH57563	Soybean	cytosol	89.9	90.78
KRH04283	Soybean	cytosol	89.9	90.78
VIT_02s0012g00710.t01	Wine grape	cytosol	77.88	90.5
GSMUA_Achr2P22200_001	Banana	cytosol	88.46	88.89
GSMUA_Achr6P10400_001	Banana	cytosol	87.98	88.41
Zm00001d021551_P002	Maize	cytosol	92.79	75.98
KRH77257	Soybean	endoplasmic reticulum	63.94	75.57
CDX81264	Canola	cytosol	73.56	75.0
AT5G64990.2	Thale cress	cytosol	75.48	73.71
Bra037802.1-P	Field mustard	cytosol	68.75	72.59
CDY18689	Canola	cytosol	73.56	70.51
VIT_02s0012g00790.t01	Wine grape	cytosol	29.33	52.59
GSMUA_Achr1P03160_001	Banana	cytosol	37.02	43.75
GSMUA_AchrUn_...	Banana	cytosol	27.88	40.28
GSMUA_Achr6P02970_001	Banana	cytosol	38.46	40.0
GSMUA_Achr7P16440_001	Banana	cytosol	38.46	39.6
GSMUA_Achr9P10010_001	Banana	cytosol	36.54	37.07
GSMUA_Achr6P31600_001	Banana	cytosol	36.06	36.76
GSMUA_Achr5P10670_001	Banana	cytosol	33.17	35.75
GSMUA_Achr4P29310_001	Banana	plastid	37.5	35.62
GSMUA_Achr4P29680_001	Banana	cytosol	39.42	35.04
GSMUA_Achr5P23540_001	Banana	endoplasmic reticulum	38.46	34.48
GSMUA_Achr1P02060_001	Banana	cytosol	39.42	34.31
GSMUA_Achr11P...	Banana	mitochondrion	32.69	32.85
GSMUA_Achr2P10990_001	Banana	cytosol	37.98	32.78
CDY23446	Canola	cytosol	92.31	31.95
GSMUA_Achr6P32620_001	Banana	mitochondrion	29.33	31.77
GSMUA_AchrUn_...	Banana	cytosol	13.94	31.18
Zm00001d024612_P011	Maize	mitochondrion	40.87	29.51
KRH28236	Soybean	cytosol	60.1	26.37

Protein Annotations

MapMan:22.8.1.8	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr5G12680_001	EnsemblPlants:GSMUA_Achr5P12680_001	EnsemblPlants:GSMUA_Achr5T12680_001
UniProt:M0SXZ7	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF840	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000296ADE1	SEG:seg	:

Description

Ras-related protein RABH1B [Source:GMGC_GENE;Acc:GSMUA_Achr5G12680_001]

Coordinates

chr5:+:9091686..9098443

Molecular Weight (calculated)

23194.7 Da

IEP (calculated)

6.717

GRAVY (calculated)

-0.192

Length

208 amino acids

Sequence
(BLAST)

001: MAPVSALAKY KLVFLGDQSV GKTSIITRFM YDKFDNTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VASRQSFLNT
101: SKWIEEVRTE RGSDVIIVVV GNKTDLVDKR QVSIEEGEAK AQELGVMFIE TSAKAGFNIK ALFRKIAAAL PGMENLSSTR QEDMVDVNLK ATNANSYQSQ
201: QQSGGCSC

Best Arabidopsis Sequence Match ( AT2G44610.1 )
(BLAST)

001: MAPVSALAKY KLVFLGDQSV GKTSIITRFM YDKFDNTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VASRQSFLNT
101: TKWIDEVRTE RGSDVIVVLV GNKTDLVDKR QVSIEEAEAK ARELNVMFIE TSAKAGFNIK ALFRKIAAAL PGMETLSSTK QEDMVDVNLK SSNANASLAQ
201: QQSGGCSC

Arabidopsis Description

RABH1BRas-related protein RABH1b [Source:UniProtKB/Swiss-Prot;Acc:O80501]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.