Factsheet for Zm00001d006433_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
golgi 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plasma membrane: 23353019
plasma membrane: 27341663

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97251	Sorghum	cytosol	100.0	100.0
TraesCS2D01G234600.1	Wheat	plastid	99.04	99.04
TraesCS2B01G261200.1	Wheat	cytosol	99.04	99.04
TraesCS2A01G236600.1	Wheat	cytosol	99.04	99.04
Os07t0496000-01	Rice	plasma membrane	99.04	99.04
HORVU2Hr1G050270.2	Barley	cytosol	99.04	99.04
GSMUA_AchrUn_...	Banana	cytosol	95.19	95.19
VIT_15s0021g00640.t01	Wine grape	cytosol	81.25	94.41
GSMUA_Achr1P00610_001	Banana	cytosol	80.77	93.85
Solyc01g088560.2.1	Tomato	plastid	93.27	93.27
GSMUA_Achr5P12680_001	Banana	plasma membrane	93.27	93.27
PGSC0003DMT400004322	Potato	cytosol	93.27	93.27
VIT_02s0012g00710.t01	Wine grape	cytosol	79.33	92.18
AT2G44610.1	Thale cress	cytosol	91.83	91.83
CDX83425	Canola	cytosol	91.83	91.83
CDY30479	Canola	cytosol	91.83	91.83
CDY48241	Canola	cytosol	91.83	91.83
CDX74672	Canola	cytosol	91.83	91.83
Bra037641.1-P	Field mustard	cytosol	91.83	91.83
CDX95606	Canola	cytosol	91.83	91.83
KRH77258	Soybean	endoplasmic reticulum	91.35	91.79
Bra004850.1-P	Field mustard	cytosol	91.35	91.35
KRH28235	Soybean	cytosol	90.87	91.3
Bra000355.1-P	Field mustard	cytosol	90.87	90.87
KRH57563	Soybean	cytosol	89.9	90.78
KRH04283	Soybean	cytosol	89.9	90.78
Zm00001d006905_P001	Maize	mitochondrion	88.94	88.52
Zm00001d021551_P002	Maize	cytosol	99.52	81.5
KRH77257	Soybean	endoplasmic reticulum	63.94	75.57
CDX81264	Canola	cytosol	72.12	73.53
AT5G64990.2	Thale cress	cytosol	74.52	72.77
Bra037802.1-P	Field mustard	cytosol	67.79	71.57
CDY18689	Canola	cytosol	72.6	69.59
Zm00001d028012_P001	Maize	cytosol, extracellular	66.35	62.16
VIT_02s0012g00790.t01	Wine grape	cytosol	29.33	52.59
Zm00001d013583_P001	Maize	cytosol	36.06	36.95
Zm00001d031179_P001	Maize	extracellular, mitochondrion	36.06	36.76
Zm00001d048410_P004	Maize	plastid	35.58	34.91
CDY23446	Canola	cytosol	91.35	31.61
Zm00001d034949_P001	Maize	extracellular, mitochondrion	35.58	29.84
Zm00001d024612_P011	Maize	mitochondrion	39.42	28.47
KRH28236	Soybean	cytosol	59.62	26.16
Zm00001d010555_P001	Maize	cytosol	12.02	25.0
Zm00001d036973_P001	Maize	cytosol	8.17	24.64

Protein Annotations

EntrezGene:100283901	MapMan:22.8.1.8	Gene3D:3.40.50.300	UniProt:B4FRS1	EMBL:BT039809	EMBL:EU966345
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0016787	ProteinID:ONM23805.1	ProteinID:ONM23816.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF840	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00017B77BF
EnsemblPlantsGene:Zm00001d006433	EnsemblPlants:Zm00001d006433_P001	EnsemblPlants:Zm00001d006433_T001	SEG:seg	:	:

Description

Ras-related protein RABH1b

Coordinates

chr2:+:207978895..207988925

Molecular Weight (calculated)

22944.5 Da

IEP (calculated)

8.171

GRAVY (calculated)

-0.132

Length

208 amino acids

Sequence
(BLAST)

001: MAPVSALAKY KLVFLGDQSV GKTSIITRFM YDKFDNTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVFD VASRQSFLNT
101: SKWIEEVRTE RGSDVIIVLV GNKTDLVDKR QVSIEEGEGK AKDLGVMFIE TSAKAGFNIK ALFRKIAAAL PGMETLSSAK QEDMVDVNLR SGNANSSQSQ
201: AQAGGCSC

Best Arabidopsis Sequence Match ( AT2G44610.1 )
(BLAST)

001: MAPVSALAKY KLVFLGDQSV GKTSIITRFM YDKFDNTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VASRQSFLNT
101: TKWIDEVRTE RGSDVIVVLV GNKTDLVDKR QVSIEEAEAK ARELNVMFIE TSAKAGFNIK ALFRKIAAAL PGMETLSSTK QEDMVDVNLK SSNANASLAQ
201: QQSGGCSC

Arabidopsis Description

RABH1BRas-related protein RABH1b [Source:UniProtKB/Swiss-Prot;Acc:O80501]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.