Factsheet for Bra037802.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 3
mitochondrion 1
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	golgi
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18689	Canola	cytosol	96.45	87.56
AT5G64990.2	Thale cress	cytosol	79.19	73.24
Bra009046.1-P	Field mustard	cytosol	72.59	69.42
GSMUA_Achr5P12680_001	Banana	plasma membrane	72.59	68.75
Os07t0496000-01	Rice	plasma membrane	72.08	68.27
HORVU2Hr1G050270.2	Barley	cytosol	72.08	68.27
TraesCS2D01G234600.1	Wheat	plastid	72.08	68.27
TraesCS2B01G261200.1	Wheat	cytosol	72.08	68.27
TraesCS2A01G236600.1	Wheat	cytosol	72.08	68.27
PGSC0003DMT400004322	Potato	cytosol	71.57	67.79
EER97251	Sorghum	cytosol	71.57	67.79
Solyc01g088560.2.1	Tomato	plastid	71.57	67.79
Zm00001d006433_P001	Maize	plasma membrane	71.57	67.79
Bra006054.1-P	Field mustard	cytosol	71.07	67.63
GSMUA_Achr1P00610_001	Banana	cytosol	61.42	67.6
Bra038535.1-P	Field mustard	cytosol	70.56	67.15
VIT_02s0012g00710.t01	Wine grape	cytosol	60.91	67.04
Bra037641.1-P	Field mustard	cytosol	70.56	66.83
GSMUA_AchrUn_...	Banana	cytosol	70.56	66.83
KRH77258	Soybean	endoplasmic reticulum	70.05	66.67
Bra004850.1-P	Field mustard	cytosol	70.05	66.35
KRH28235	Soybean	cytosol	69.54	66.18
Bra000355.1-P	Field mustard	cytosol	69.54	65.87
Zm00001d021551_P002	Maize	cytosol	71.07	55.12
Bra017875.1-P	Field mustard	mitochondrion	65.99	50.39
Bra025091.1-P	Field mustard	cytosol	36.04	35.5
Bra013410.1-P	Field mustard	cytosol	36.04	35.5
Bra027593.1-P	Field mustard	cytosol	34.52	34.17
Bra014785.1-P	Field mustard	cytosol, plastid	32.99	32.66
Zm00001d024612_P011	Maize	mitochondrion	34.52	23.61
Bra007104.1-P	Field mustard	endoplasmic reticulum	32.99	23.38

Protein Annotations

MapMan:22.8.1.8	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra037802	EnsemblPlants:Bra037802.1	EnsemblPlants:Bra037802.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0016787	UniProt:M4F9N9
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF630
SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI0002541B36	:	:	:	:

Description

AT5G64990 (E=3e-080) AtRABH1a | AtRABH1a (Arabidopsis Rab GTPase homolog H1a); GTP binding

Coordinates

chrA09:-:3644693..3645952

Molecular Weight (calculated)

22132.2 Da

IEP (calculated)

6.783

GRAVY (calculated)

-0.389

Length

197 amino acids

Sequence
(BLAST)

001: MTHLGNYKLV FLGDQAVGKT SIITCFMYGN FDTNYQATIG IDFLSKTMRH EDTTFRLQLW DTAGQERFKS LIPILNSSHN DVDKQSFINA SKWIEDVHAE
101: RGNQVIIALV GNKTDLVHRR QVSIEEGDTK ARELGALFIE TSAKAGFNIK PLFCKIASAL QGTETQTWTR QEDLVDVNLK PMTNSSHSQQ QQGNCSC

Best Arabidopsis Sequence Match ( AT5G64990.1 )
(BLAST)

001: MGDLGKGYKL VFLGDQGVGK TSIITCFMYG KFDTSYQATI GIDFLSKTTR YEDRTFRLQL WDTAGQERFK SLVPSYIRDS SVAVIVYDVA SKQSFINTSK
101: WIEEVRAERG SYVIIVLVGN KTDLVNKRQV SIEEGENKAR EFGALFMETS AKAGFNIKPL FCKITSALQG NEAVSWTKQE DLVDVNLKPL MFSSQANHQQ
201: ESNCSC

Arabidopsis Description

AtRABH1aRAB GTPase homolog H1A [Source:UniProtKB/TrEMBL;Acc:F4KGG4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.