Factsheet for Bra013410.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
plasma membrane 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000503.1-P
Bra011404.1-P
Bra012009.1-P
Bra034543.1-P
Bra037030.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19640.1	Bra000503.1-P	AT2G27600.1	17468262
AT4G19640.1	Bra012009.1-P	AT2G27600.1	17468262
AT4G19640.1	Bra011404.1-P	AT4G33000.1	17825054
AT4G19640.1	Bra034543.1-P	AT4G33000.1	17825054
AT4G19640.1	Bra037030.1-P	AT4G33000.1	17825054

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78949	Canola	cytosol	98.5	98.01
AT4G19640.1	Thale cress	cytosol	95.5	95.5
Bra025091.1-P	Field mustard	cytosol	88.0	88.0
Bra027593.1-P	Field mustard	cytosol	87.5	87.94
Solyc02g069370.2.1	Tomato	plastid	84.5	84.5
KRG98019	Soybean	cytosol	79.5	79.5
Os03t0666500-01	Rice	plasma membrane	78.5	77.34
EER93694	Sorghum	cytosol	78.5	77.34
Zm00001d013583_P001	Maize	cytosol	78.0	76.85
TraesCS4A01G294600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	78.5	76.59
TraesCS4B01G019100.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	78.5	76.59
Zm00001d031179_P001	Maize	extracellular, mitochondrion	78.0	76.47
KXG24102	Sorghum	cytosol	78.0	76.47
GSMUA_Achr7P16440_001	Banana	cytosol	77.0	76.24
Os12t0631100-01	Rice	plasma membrane	76.5	75.37
PGSC0003DMT400055259	Potato	cytosol, plastid	75.0	75.0
PGSC0003DMT400050774	Potato	cytosol	74.5	74.5
HORVU5Hr1G002970.1	Barley	plastid	77.5	74.16
TraesCS5B01G014400.1	Wheat	plastid	77.0	73.68
TraesCS5D01G022200.2	Wheat	golgi	76.5	73.21
TraesCS4D01G017300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	78.5	73.02
GSMUA_Achr9P10010_001	Banana	cytosol	74.5	72.68
KRH20053	Soybean	endoplasmic reticulum	79.5	68.24
HORVU4Hr1G002980.2	Barley	cytosol	78.5	65.69
GSMUA_Achr6P31600_001	Banana	cytosol	66.5	65.2
Zm00001d034949_P001	Maize	extracellular, mitochondrion	77.5	62.5
VIT_04s0079g00760.t01	Wine grape	cytosol	71.0	62.01
Bra014785.1-P	Field mustard	cytosol, plastid	48.5	48.74
Bra037641.1-P	Field mustard	cytosol	40.0	38.46
Bra000355.1-P	Field mustard	cytosol	40.0	38.46
Bra004850.1-P	Field mustard	cytosol	39.5	37.98
Bra006054.1-P	Field mustard	cytosol	39.0	37.68
Bra009046.1-P	Field mustard	cytosol	38.0	36.89
Bra038535.1-P	Field mustard	cytosol	38.0	36.72
Bra037802.1-P	Field mustard	cytosol	35.5	36.04
Bra007104.1-P	Field mustard	endoplasmic reticulum	48.0	34.53
Bra017875.1-P	Field mustard	mitochondrion	38.0	29.46

Protein Annotations

MapMan:22.8.1.6	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra013410	EnsemblPlants:Bra013410.1	EnsemblPlants:Bra013410.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005769	GO:GO:0005783
GO:GO:0005886	GO:GO:0006810	GO:GO:0006886	GO:GO:0007033	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0016787	GO:GO:0045324	UniProt:M4DAA0	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF622	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI0002546649	:	:	:	:

Description

AT4G19640 (E=1e-105) ARA7, ARA-7, ATRABF2B, ATRAB5B, RABF2B, ATRAB-F2B, RAB-F2B | ARA7; GTP binding

Coordinates

chrA01:-:5489527..5490854

Molecular Weight (calculated)

21852.0 Da

IEP (calculated)

5.987

GRAVY (calculated)

-0.163

Length

200 amino acids

Sequence
(BLAST)

001: MATSGNKTIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DVTNQASFER
101: AKKWVQELQA QGNTNMVMAL AGNKSDLLDA KKVTAEEAQT YAQENGLFFM ETSAKTAANV KEIFYEIARR LPRVQPTENP TGMVLPDRAM DRGASSSCCA

Best Arabidopsis Sequence Match ( AT4G19640.1 )
(BLAST)

001: MAAAGNKSIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DVTNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKSDLLDA RKVTAEDAQT YAQENGLFFM ETSAKTATNV KEIFYEIARR LPRVQPTENP TGMVLPDRAM DRAVSSSCCA

Arabidopsis Description

RABF2BRABF2B [Source:UniProtKB/TrEMBL;Acc:A0A178UXV7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.