CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00346
KXG32770
KXG33232

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19640.1	EES00346	AT2G27600.1	17468262
AT4G19640.1	KXG32770	AT4G33000.1	17825054
AT4G19640.1	KXG33232	AT4G33000.1	17825054

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013583_P001	Maize	cytosol	97.54	97.54
Os03t0666500-01	Rice	plasma membrane	92.12	92.12
KXG24102	Sorghum	cytosol	92.12	91.67
TraesCS4A01G294600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	90.15	89.27
TraesCS4B01G019100.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	90.15	89.27
TraesCS4D01G017300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	90.15	85.12
GSMUA_Achr7P16440_001	Banana	cytosol	81.77	82.18
Solyc02g069370.2.1	Tomato	plastid	80.3	81.5
CDY13065	Canola	cytosol	79.31	80.5
CDY23153	Canola	cytosol	78.82	80.0
CDX82579	Canola	cytosol	78.82	80.0
GSMUA_Achr9P10010_001	Banana	cytosol	80.79	80.0
CDY39412	Canola	cytosol	78.33	79.5
Bra025091.1-P	Field mustard	cytosol	78.33	79.5
AT4G19640.1	Thale cress	cytosol	78.33	79.5
Bra027593.1-P	Field mustard	cytosol	77.83	79.4
Bra013410.1-P	Field mustard	cytosol	77.34	78.5
KRG98019	Soybean	cytosol	77.34	78.5
CDX99356	Canola	cytosol	77.34	78.11
CDX78949	Canola	cytosol	77.34	78.11
Zm00001d034949_P001	Maize	extracellular, mitochondrion	95.07	77.82
HORVU4Hr1G002980.2	Barley	cytosol	90.15	76.57
PGSC0003DMT400050774	Potato	cytosol	73.89	75.0
AT5G45130.2	Thale cress	endoplasmic reticulum	76.35	74.52
PGSC0003DMT400055259	Potato	cytosol, plastid	72.91	74.0
GSMUA_Achr6P31600_001	Banana	cytosol	71.92	71.57
KRH20053	Soybean	endoplasmic reticulum	77.34	67.38
VIT_04s0079g00760.t01	Wine grape	cytosol	67.98	60.26
KXG20675	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	58.62	59.5
CDX78945	Canola	cytosol	14.29	56.86
OQU93218	Sorghum	plastid	51.23	52.0
CDY09323	Canola	extracellular, plastid, vacuole	28.08	50.0
EER97564	Sorghum	cytosol	38.92	37.8
KXG39985	Sorghum	cytosol	38.42	36.62
EER97251	Sorghum	cytosol	36.95	36.06

Protein Annotations

MapMan:22.8.1.6	Gene3D:3.40.50.300	EntrezGene:8056748	UniProt:C5WQB6	EnsemblPlants:EER93694	ProteinID:EER93694
ProteinID:EER93694.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0016787	GO:GO:0030139	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF622	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
EnsemblPlantsGene:SORBI_3001G143300	SUPFAM:SSF52540	unigene:Sbi.3421	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI0001A82A8A	RefSeq:XP_002466696.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:11487034..11491162

Molecular Weight (calculated)

22122.3 Da

IEP (calculated)

8.181

GRAVY (calculated)

-0.186

Length

203 amino acids

Sequence
(BLAST)

001: MAANAGNKIR NAKLVLLGDV GAGKSSLVLR FVKGQFVEFQ ESTIGAAFFS QTLAVNDETV KFEIWDTAGQ ERYHSLAPMY YRGAAAAIVV YDITNPASFT
101: RAKKWVQELQ AQGNPNTIVA LAGNKADMLD ARQVPAEEAK TYAQENGLFF METSAKSAIN VNDIFYEIAK RLLQGQQAPS PQAGMVLNQR PNERMVSSSS
201: CCS

Best Arabidopsis Sequence Match ( AT4G19640.1 )
(BLAST)

001: MAAAGNKSIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DVTNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKSDLLDA RKVTAEDAQT YAQENGLFFM ETSAKTATNV KEIFYEIARR LPRVQPTENP TGMVLPDRAM DRAVSSSCCA

Arabidopsis Description

RABF2BRABF2B [Source:UniProtKB/TrEMBL;Acc:A0A178UXV7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.