CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2
plasma membrane 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90021
EER93694
KXG24102
OQU93218

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33000.1	OQU93218	AT3G54840.1	17825054
AT4G33000.1	EER93694	AT4G19640.1	17825054
AT4G33000.1	KXG24102	AT4G19640.1	17825054
AT4G33000.1	EER90021	AT5G35410.1	17449811
AT4G33000.1	EER90021	AT5G35410.1	17825054
AT4G33000.1	EER90021	AT5G35410.1	19448033

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G064500.2	Wheat	cytosol, golgi, mitochondrion	73.98	79.73
TraesCS3D01G211300.1	Wheat	cytosol	71.16	78.82
TraesCS3A01G053300.1	Wheat	golgi	71.79	78.42
TraesCS3B01G235500.1	Wheat	cytosol	70.53	78.12
Zm00001d044285_P003	Maize	plastid	87.15	77.01
Bra011404.1-P	Field mustard	cytosol, plastid	50.16	75.83
CDY04300	Canola	cytosol	30.41	74.05
VIT_04s0008g00950.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, plastid	58.31	72.09
CDX75314	Canola	cytosol, endoplasmic reticulum	54.55	69.88
CDX68929	Canola	cytosol, endoplasmic reticulum, mitochondrion	54.55	69.88
Os01t0579600-01	Rice	cytosol	47.02	68.81
CDY45024	Canola	cytosol	52.98	68.7
Bra034543.1-P	Field mustard	cytosol	52.98	68.7
CDY28278	Canola	cytosol	52.66	68.29
VIT_04s0008g00960.t01	Wine grape	plastid	53.29	67.73
Solyc08g065330.2.1	Tomato	endoplasmic reticulum, extracellular	54.55	67.7
CDY13513	Canola	endoplasmic reticulum, nucleus, plasma membrane	44.83	65.9
AT4G33000.1	Thale cress	golgi, plastid	52.66	65.62
TraesCS3A01G208300.2	Wheat	cytosol, mitochondrion	73.67	64.74
Bra037030.1-P	Field mustard	cytosol	52.35	64.73
GSMUA_Achr3P32370_001	Banana	cytosol	52.98	64.02
CDX72384	Canola	cytosol	52.98	63.3
KXG33232	Sorghum	endoplasmic reticulum	56.11	63.25
EES16698	Sorghum	cytosol	43.26	61.88
KRH44162	Soybean	cytosol, extracellular	51.1	61.51
KRH47134	Soybean	cytosol	49.22	59.7
EES06704	Sorghum	cytosol	39.81	59.62
OQU79501	Sorghum	cytosol	42.01	59.56
EER94470	Sorghum	cytosol	39.5	59.15
KRH05482	Soybean	cytosol, plasma membrane, plastid	46.71	57.75
PGSC0003DMT400076980	Potato	mitochondrion	51.1	56.21
KXG22403	Sorghum	cytosol	36.68	55.19
KXG32826	Sorghum	cytosol	36.99	54.13
OQU84945	Sorghum	cytosol	15.05	51.06

Protein Annotations

Gene3D:1.10.238.10	MapMan:26.6.1.1.3	UniProt:C4P7Y1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
EMBL:FJ901260	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	EnsemblPlants:KXG32770
ProteinID:KXG32770	ProteinID:KXG32770.1	PFAM:PF13499	PFAM:PF13833	PRINTS:PR00450	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR23056	PANTHER:PTHR23056:SF26	SMART:SM00054	EnsemblPlantsGene:SORBI_3003G196400	SUPFAM:SSF47473
UniParc:UPI0001A4203E	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:52152820..52157258

Molecular Weight (calculated)

35868.4 Da

IEP (calculated)

4.932

GRAVY (calculated)

-0.187

Length

319 amino acids

Sequence
(BLAST)

001: MPRATEAAPP PQAFQCTPGR HPVAMESRFG FRYSSGDVRS GSSLSLGERL CAVFFPFIAI AEAVFFAFTD CLADLCPGSD SSASGAGASS SDAKNSRTNH
101: HHHHHYRPFL RRAAAGGWTS LNLRQLARLA DESGCFSVNE VEALFELYKK ISCSIINDGL IHKEELQLAL FKTPSGENLF LDRVFDLFDE KKNGVIEFDE
201: FIHALSVFHP LAPMEDKIDF AFRLYDLRQT GFIEREEVKQ MVIAILMESD VKLSDDLLEA IIDKTFEDAD ADKDGKINQE EWKEFVLRHP NLLKNMTLPY
301: LRDVTTVFPS FVFNTAVED

Best Arabidopsis Sequence Match ( AT4G33000.2 )
(BLAST)

001: MEQVSSRSSS LTVGEQFCAV FIPFFAIIDV LVSSVGQCFD CRSTSPRTCQ HADLERLARE SQFSVNEVEA LYELFKKLSC SIIDDGLIHK EELRLALFQA
101: PYGENLFLDR VFDLFDEKKN GVIEFEEFIH ALSVFHPYAS IQEKTDFAFR LYDLRQTGFI EREEVQQMVS AILLESDMML SDELLTMIID KTFADADSDK
201: DGKISKDEWN VYVHKHPSLL KNMTLPYLKD VTTAFPSFIF NTEVED

Arabidopsis Description

CBL10Calcineurin B-like 10 [Source:UniProtKB/TrEMBL;Acc:M5BEI3]
SUBAcon: [endoplasmic reticulum,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.