CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plasma membrane
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU88438

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64480.1	OQU88438	AT1G30270.1	16814720

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053293_P001	Maize	cytosol	80.28	88.14
Os02t0291000-00	Rice	cytosol	87.32	87.32
HORVU1Hr1G064470.1	Barley	cytosol	86.85	86.85
TraesCS1D01G261200.1	Wheat	cytosol	85.92	85.92
Os02t0291400-00	Rice	plasma membrane	82.63	82.63
TraesCS1B01G272000.1	Wheat	cytosol	86.39	82.14
TraesCS1A01G261200.1	Wheat	cytosol	86.39	82.14
TraesCS1D01G346500.1	Wheat	cytosol	79.34	78.6
TraesCS1D01G346400.1	Wheat	cytosol	78.87	78.14
TraesCS1B01G357200.1	Wheat	cytosol	77.93	77.21
KXG22403	Sorghum	cytosol	68.54	68.87
GSMUA_Achr3P03340_001	Banana	cytosol	68.08	68.4
VIT_02s0025g01640.t01	Wine grape	cytosol	65.26	63.47
KXG32826	Sorghum	cytosol	63.85	62.39
Bra027703.1-P	Field mustard	mitochondrion	62.44	62.15
AT1G64480.1	Thale cress	cytosol, mitochondrion	61.97	61.68
CDY64882	Canola	mitochondrion	61.97	61.68
CDY46533	Canola	mitochondrion	61.97	61.68
Solyc12g055920.1.1	Tomato	cytosol, mitochondrion	65.26	61.5
EER94470	Sorghum	cytosol	61.5	61.5
PGSC0003DMT400046089	Potato	cytosol	53.52	58.46
OQU79501	Sorghum	cytosol	58.69	55.56
EES16698	Sorghum	cytosol	56.34	53.81
Solyc08g036590.1.1	Tomato	endoplasmic reticulum, extracellular	56.34	52.4
Solyc08g054570.1.1	Tomato	cytosol	43.66	50.0
OQU84945	Sorghum	cytosol	19.72	44.68
KXG33232	Sorghum	endoplasmic reticulum	57.28	43.11
KXG32770	Sorghum	cytosol, plastid	59.62	39.81

Protein Annotations

Gene3D:1.10.238.10	MapMan:26.6.1.1.1	EntrezGene:8081639	UniProt:C4P7Y4	EnsemblPlants:EES06704	ProteinID:EES06704
ProteinID:EES06704.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	EMBL:FJ901263	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	ProteinID:KXG30063.1	PFAM:PF00036	PFAM:PF13499
PRINTS:PR00450	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR23056	PANTHER:PTHR23056:SF59	SMART:SM00054
EnsemblPlantsGene:SORBI_3004G130600	SUPFAM:SSF47473	unigene:Sbi.21350	UniParc:UPI0001A42041	RefSeq:XP_002453728.1	:

Description

hypothetical protein

Coordinates

chr4:-:16905085..16908896

Molecular Weight (calculated)

24388.1 Da

IEP (calculated)

4.446

GRAVY (calculated)

-0.251

Length

213 amino acids

Sequence
(BLAST)

001: MGCVYSKGSK RPPGYVDPNI LAKETTFSVN EVEALYELYK KISYSIIKDG LIHKEEFQLA LFRNSNKKNL FADRIFDLFD LKRNGVIDFE EFVQSLSIFH
101: PDTPMAEKIA FAFRLYDLRG TGFIEREELK EMVLAILNES ELLLSDDAVE QIVDQTFKQA DMNDDGKIDP DEWKVFASKN PALLKNMTLP YLKDITMAFP
201: SFVLNSGASD EEL

Best Arabidopsis Sequence Match ( AT5G24270.2 )
(BLAST)

001: MGCSVSKKKK KNAMRPPGYE DPELLASVTP FTVEEVEALY ELFKKLSSSI IDDGLIHKEE FQLALFRNRN RRNLFADRIF DVFDVKRNGV IEFGEFVRSL
101: GVFHPSAPVH EKVKFAFKLY DLRQTGFIER EELKEMVVAL LHESELVLSE DMIEVMVDKA FVQADRKNDG KIDIDEWKDF VSLNPSLIKN MTLPYLKDIN
201: RTFPSFVSSC EEEEMELQNV SS

Arabidopsis Description

CBL4Calcineurin B-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:O81223]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.