CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
mitochondrion 1
endoplasmic reticulum 4
plasma membrane 4
extracellular 3
vacuole 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90021
EER93694
KXG24102
OQU93218

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33000.1	OQU93218	AT3G54840.1	17825054
AT4G33000.1	EER93694	AT4G19640.1	17825054
AT4G33000.1	KXG24102	AT4G19640.1	17825054
AT4G33000.1	EER90021	AT5G35410.1	17449811
AT4G33000.1	EER90021	AT5G35410.1	17825054
AT4G33000.1	EER90021	AT5G35410.1	19448033

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0711500-00	Rice	plastid	81.63	86.84
CDY04300	Canola	cytosol	32.16	69.47
Bra011404.1-P	Field mustard	cytosol, plastid	50.88	68.25
CDX68929	Canola	cytosol, endoplasmic reticulum, mitochondrion	56.89	64.66
CDX75314	Canola	cytosol, endoplasmic reticulum	56.89	64.66
CDY28278	Canola	cytosol	56.18	64.63
Bra034543.1-P	Field mustard	cytosol	55.83	64.23
CDY45024	Canola	cytosol	55.48	63.82
VIT_04s0008g00950.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, plastid	57.95	63.57
Solyc08g065330.2.1	Tomato	endoplasmic reticulum, extracellular	56.18	61.87
CDY13513	Canola	endoplasmic reticulum, nucleus, plasma membrane	47.35	61.75
VIT_04s0008g00960.t01	Wine grape	plastid	54.06	60.96
AT4G33000.1	Thale cress	golgi, plastid	55.12	60.94
CDX72384	Canola	cytosol	57.24	60.67
Bra037030.1-P	Field mustard	cytosol	54.77	60.08
OQU79501	Sorghum	cytosol	47.7	60.0
EES16698	Sorghum	cytosol	47.0	59.64
EES06704	Sorghum	cytosol	43.11	57.28
KRH47134	Soybean	cytosol	53.0	57.03
KRH44162	Soybean	cytosol, extracellular	53.36	56.98
GSMUA_Achr3P32370_001	Banana	cytosol	53.0	56.82
EER94470	Sorghum	cytosol	42.76	56.81
KXG32770	Sorghum	cytosol, plastid	63.25	56.11
KRH05482	Soybean	cytosol, plasma membrane, plastid	50.53	55.43
KXG22403	Sorghum	cytosol	40.64	54.25
KXG32826	Sorghum	cytosol	39.93	51.83
PGSC0003DMT400076980	Potato	mitochondrion	53.0	51.72
OQU84945	Sorghum	cytosol	16.96	51.06

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	UniProt:C4P7Y3	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
EMBL:FJ901262	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	EnsemblPlants:KXG33232
ProteinID:KXG33232	ProteinID:KXG33232.1	PFAM:PF13499	PRINTS:PR00450	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR23056	PANTHER:PTHR23056:SF26	SMART:SM00054	EnsemblPlantsGene:SORBI_3003G275000	SUPFAM:SSF47473	UniParc:UPI0001A42040
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:61123591..61127013

Molecular Weight (calculated)

32291.6 Da

IEP (calculated)

5.135

GRAVY (calculated)

-0.160

Length

283 amino acids

Sequence
(BLAST)

001: MDSFRSSNSL ASRSSLTLGE LACAALFPVL AVVDAVLHAA LRCFQKTSPS LLPVLDICAR HRAGRRLTFR ELAELADESR CFSVNEVEAL YELYKKISCS
101: IVDDGLIHKE ELQLALFKTP SGKNLFLDRV APCYNAKIPR KTEKKNTVFD LFDEKKNSVI EFEEFVHAIS VFHPNAPLED KIDFSFRLYD LRQTGFIERE
201: EVKQMVVATL MESQFELSDD LVETIIDKTF EDADTDKDNR ISREEWRAFV LLHPSVIKKM TLPHLKDTTA AFPSFVFNTQ VED

Best Arabidopsis Sequence Match ( AT4G33000.1 )
(BLAST)

001: MTTGRPNNIL ALKISTRSSS LTVGEQFCAV FIPFFAIIDV LVSSVGQCFD CRSTSPRTCQ HADLERLARE SQFSVNEVEA LYELFKKLSC SIIDDGLIHK
101: EELRLALFQA PYGENLFLDR VFDLFDEKKN GVIEFEEFIH ALSVFHPYAS IQEKTDFAFR LYDLRQTGFI EREEVQQMVS AILLESDMML SDELLTMIID
201: KTFADADSDK DGKISKDEWN VYVHKHPSLL KNMTLPYLKD VTTAFPSFIF NTEVED

Arabidopsis Description

CBL10Calcineurin B-like 10 [Source:UniProtKB/TrEMBL;Acc:M5BEI3]
SUBAcon: [golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.