CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78272
CDX78945
CDX78949
CDX99356
CDY02896
CDY09323
CDY36813
CDY44603
CDY55834
CDY61658

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33000.1	CDX78272	AT3G54840.1	17825054
AT4G33000.1	CDY02896	AT3G54840.1	17825054
AT4G33000.1	CDY55834	AT3G54840.1	17825054
AT4G33000.1	CDY61658	AT3G54840.1	17825054
AT4G33000.1	CDX78945	AT4G19640.1	17825054
AT4G33000.1	CDX78949	AT4G19640.1	17825054
AT4G33000.1	CDX99356	AT4G19640.1	17825054
AT4G33000.1	CDY09323	AT4G19640.1	17825054
AT4G33000.1	CDY36813	AT5G35410.1	17449811
AT4G33000.1	CDY44603	AT5G35410.1	17449811
AT4G33000.1	CDY36813	AT5G35410.1	17825054
AT4G33000.1	CDY44603	AT5G35410.1	17825054
AT4G33000.1	CDY36813	AT5G35410.1	19448033
AT4G33000.1	CDY44603	AT5G35410.1	19448033

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75314	Canola	cytosol, endoplasmic reticulum	99.2	99.2
Bra011404.1-P	Field mustard	cytosol, plastid	76.71	90.52
CDY45024	Canola	cytosol	86.75	87.8
CDY28278	Canola	cytosol	86.75	87.8
CDY13513	Canola	endoplasmic reticulum, nucleus, plasma membrane	75.9	87.1
CDY04300	Canola	cytosol	45.38	86.26
CDX72384	Canola	cytosol	89.56	83.52
AT4G33000.1	Thale cress	golgi, plastid	84.74	82.42
Solyc08g065330.2.1	Tomato	endoplasmic reticulum, extracellular	71.49	69.26
VIT_04s0008g00950.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, plastid	69.88	67.44
VIT_04s0008g00960.t01	Wine grape	plastid	65.46	64.94
KRH44162	Soybean	cytosol, extracellular	67.47	63.4
Os01t0711500-00	Rice	plastid	67.47	63.16
KRH47134	Soybean	cytosol	66.27	62.74
GSMUA_Achr3P32370_001	Banana	cytosol	65.86	62.12
CDY67196	Canola	cytosol	16.87	60.0
TraesCS3A01G053300.1	Wheat	golgi	69.88	59.59
TraesCS3D01G211300.1	Wheat	cytosol	68.27	59.03
TraesCS3B01G235500.1	Wheat	cytosol	67.47	58.33
CDY62266	Canola	cytosol	11.24	58.33
PGSC0003DMT400076980	Potato	mitochondrion	67.87	58.28
CDX94315	Canola	cytosol	52.61	57.96
CDX89324	Canola	cytosol	52.61	57.96
TraesCS3B01G064500.2	Wheat	cytosol, golgi, mitochondrion	68.67	57.77
CDY42728	Canola	cytosol	52.21	57.52
CDX92814	Canola	cytosol	52.21	57.52
KRH05482	Soybean	cytosol, plasma membrane, plastid	59.04	56.98
KXG33232	Sorghum	endoplasmic reticulum	64.66	56.89
CDY09616	Canola	cytosol	48.59	56.81
CDX90465	Canola	cytosol	48.19	56.34
CDY06547	Canola	cytosol	51.0	56.19
CDY64981	Canola	cytosol	51.0	56.19
CDY19840	Canola	cytosol	49.0	55.96
CDY38412	Canola	cytosol	47.79	55.87
CDY69850	Canola	cytosol	47.79	55.87
CDY25987	Canola	cytosol	47.79	55.87
CDX80425	Canola	cytosol	49.4	55.66
CDY28977	Canola	cytosol	47.39	55.4
CDX78784	Canola	cytosol	47.39	55.4
CDY40580	Canola	cytosol	47.39	55.4
KXG32770	Sorghum	cytosol, plastid	69.88	54.55
CDX87133	Canola	cytosol	46.99	54.17
CDY64882	Canola	mitochondrion	45.78	53.27
CDY46533	Canola	mitochondrion	45.78	53.27
CDY11963	Canola	cytosol	50.6	52.94
CDY36774	Canola	cytosol	50.6	52.94
CDY44281	Canola	cytosol	46.99	52.94
CDY59968	Canola	cytosol, plasma membrane	46.18	52.04
CDY32236	Canola	cytosol, extracellular	44.98	49.34
CDY34452	Canola	cytosol, extracellular	44.18	48.46
Zm00001d044285_P003	Maize	plastid	69.08	47.65
TraesCS3A01G208300.2	Wheat	cytosol, mitochondrion	68.27	46.83
Os01t0579600-01	Rice	cytosol	39.36	44.95
CDY56859	Canola	cytosol	34.94	42.44
CDX92464	Canola	cytosol	34.54	41.95
CDX89325	Canola	plastid	43.78	39.64
CDX94316	Canola	plastid	40.96	36.96

Protein Annotations

Gene3D:1.10.238.10	MapMan:26.6.1.1.3	GO:A0A078BYC5	EnsemblPlants:CDX68929	ProteinID:CDX68929	ProteinID:CDX68929.1
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
EnsemblPlantsGene:GSBRNA2T00130673001	InterPro:IPR002048	PFAM:PF13499	PFAM:PF13833	PRINTS:PR00450	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR23056	PANTHER:PTHR23056:SF26	SMART:SM00054	SUPFAM:SSF47473	TMHMM:TMhelix
UniParc:UPI0004EBA877	SEG:seg	:	:	:	:

Description

BnaC01g05240D

Coordinates

chrLK031789:+:2078907..2080786

Molecular Weight (calculated)

28726.6 Da

IEP (calculated)

4.712

GRAVY (calculated)

-0.016

Length

249 amino acids

Sequence
(BLAST)

001: MDWPKVSSRS SSLTVGEKVC AVFIPLFAII DILFSTIGQC FDCRRRRSPQ VCHHVDLARL AHGSPFSVNE VEALYELFKK LSCSIIDDGL IHKEELRLAL
101: FQAPYGENLF LDRVFDLFDE KKNGVIEFEE FIHALSVFHP YAPIEEKIDF AFRLYDLRQT GYIEREEVHQ MVAAILMESE MILSDELLTM IIDKTFADAD
201: ADKDGKISKE EWKVYVLKHP TLLKNMTLPY LKDVTTAFPS FIFNTEVED

Best Arabidopsis Sequence Match ( AT4G33000.2 )
(BLAST)

001: MEQVSSRSSS LTVGEQFCAV FIPFFAIIDV LVSSVGQCFD CRSTSPRTCQ HADLERLARE SQFSVNEVEA LYELFKKLSC SIIDDGLIHK EELRLALFQA
101: PYGENLFLDR VFDLFDEKKN GVIEFEEFIH ALSVFHPYAS IQEKTDFAFR LYDLRQTGFI EREEVQQMVS AILLESDMML SDELLTMIID KTFADADSDK
201: DGKISKDEWN VYVHKHPSLL KNMTLPYLKD VTTAFPSFIF NTEVED

Arabidopsis Description

CBL10Calcineurin B-like 10 [Source:UniProtKB/TrEMBL;Acc:M5BEI3]
SUBAcon: [endoplasmic reticulum,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.