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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, cytosol

Predictor Summary:
  • plastid 1
  • cytosol 2
  • extracellular 3
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, extracellular
Any Predictor:cytosol, plastid, secretory
BaCelLo:plastid
MultiLoc:cytosol
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX75921
CDX82366
CDX84840
CDX92136
CDX95849
CDY02060
CDY04828
CDY10342
CDY10690
CDY24005
CDY29680
CDY35487
CDY40835
CDY54010
CDY68071

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G16350.1 CDX84840 AT2G30360.1 11230129
AT4G16350.1 CDY02060 AT2G30360.1 11230129
AT4G16350.1 CDY24005 AT2G30360.1 11230129
AT4G16350.1 CDY29680 AT2G30360.1 11230129
AT4G16350.1 CDY54010 AT2G30360.1 11230129
AT4G16350.1 CDY68071 AT2G30360.1 11230129
AT4G16350.1 CDX75921 AT3G17510.1 11230129
AT4G16350.1 CDX82366 AT3G17510.1 11230129
AT4G16350.1 CDX92136 AT3G17510.1 11230129
AT4G16350.1 CDX95849 AT3G17510.1 11230129
AT4G16350.1 CDY10342 AT3G23000.1 11230129
AT4G16350.1 CDY10690 AT3G23000.1 11230129
AT4G16350.1 CDY35487 AT3G23000.1 11230129
AT4G16350.1 CDY40835 AT3G23000.1 11230129
AT4G16350.1 CDY04828 AT5G01820.1 11230129
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY32236 Canola cytosol, extracellular 96.92 96.92
CDY62266 Canola cytosol 17.18 81.25
AT4G16350.1 Thale cress cytosol, extracellular 77.97 78.32
CDY67196 Canola cytosol 22.91 74.29
CDY64981 Canola cytosol 69.6 69.91
CDY06547 Canola cytosol 69.6 69.91
CDX89324 Canola cytosol 69.16 69.47
CDX94315 Canola cytosol 69.16 69.47
CDY42728 Canola cytosol 68.72 69.03
CDX92814 Canola cytosol 68.72 69.03
CDY11963 Canola cytosol 68.72 65.55
CDY36774 Canola cytosol 68.28 65.13
CDY40580 Canola cytosol 48.9 52.11
CDY28977 Canola cytosol 48.46 51.64
CDY09616 Canola cytosol 48.46 51.64
CDX90465 Canola cytosol 48.46 51.64
CDY38412 Canola cytosol 48.02 51.17
CDY69850 Canola cytosol 48.02 51.17
CDY25987 Canola cytosol 48.02 51.17
CDX78784 Canola cytosol 47.58 50.7
CDY04300 Canola cytosol 28.63 49.62
CDY19840 Canola cytosol 45.81 47.71
CDX80425 Canola cytosol 45.37 46.61
CDX87133 Canola cytosol 44.05 46.3
CDX89325 Canola plastid 55.95 46.18
CDY59968 Canola cytosol, plasma membrane 44.05 45.25
CDY46533 Canola mitochondrion 42.29 44.86
CDY64882 Canola mitochondrion 42.29 44.86
CDY44281 Canola cytosol 43.61 44.8
CDY28278 Canola cytosol 48.02 44.31
CDY45024 Canola cytosol 48.02 44.31
CDX75314 Canola cytosol, endoplasmic reticulum 48.46 44.18
CDX68929 Canola cytosol, endoplasmic reticulum, mitochondrion 48.46 44.18
CDY13513 Canola endoplasmic reticulum, nucleus, plasma membrane 40.97 42.86
CDX94316 Canola plastid 51.98 42.75
CDX72384 Canola cytosol 48.46 41.2
CDY56859 Canola cytosol 36.56 40.49
CDX92464 Canola cytosol 34.8 38.54
Protein Annotations
EnsemblPlants:CDY34452EnsemblPlantsGene:GSBRNA2T00056545001Gene3D:1.10.238.10GO:A0A078H9V6GO:GO:0003674GO:GO:0005488
GO:GO:0005509InterPro:EF-hand-dom_pairInterPro:EF_hand_domInterPro:IPR002048PANTHER:PTHR23056PANTHER:PTHR23056:SF51
PFAM:PF13499PFscan:PS50222PRINTS:PR00450ProteinID:CDY34452ProteinID:CDY34452.1SMART:SM00054
SUPFAM:SSF47473UniParc:UPI0004EF45EBUniProt:A0A078H9V6MapMan:35.1::
Description
BnaC01g21810DBnaC01g21810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H9V6]
Coordinates
chrLK032334:-:241747..243821
Molecular Weight (calculated)
26170.7 Da
IEP (calculated)
6.310
GRAVY (calculated)
-0.235
Length
227 amino acids
Sequence
(BLAST)
001: MMMQCLDALK HFSIFLLTCC DSDRHQHSGG LPNPKDLARG TVFTVNEIEA LYEMFKSISK AGLIDKEQFQ LVLFKSNRKK SLFADRVFDL FDTKHTGILD
101: FETFARAISV FHPKARMEDK LEFAFKLYDL KHQGFIERQE LRQMMVATLA ESGMNLSDGV IEIIIDKTFE EADSKMDGKI DKEEWQSLVL RHPSLLQNMT
201: LQHLKDITKT FPNFVFYTIV TDNPSSG
Best Arabidopsis Sequence Match ( AT4G16350.2 )
(BLAST)
001: MMMQCLDGLK HLALILLTCC DADPPKVRQN PKDVARGTVF TVNEIEALYE LFKSISKNGL IDKEQFQLVL FKMNTTRSLF ADRVFDLFDT KNTGILDFEA
101: FARSLSVFHP NAKFEDKIEF SFKLYDLNQQ GYIKRQEVKQ MVVRTLAESG MNLSDHVIES IIDKTFEEAD TKLDGKIDKE EWRSLVLRHP SLLQNMSLQH
201: LKDVTKTFPN FVFHTIVTDT PSELDG
Arabidopsis Description
CBL6Calcineurin B-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5P6]
SUBAcon: [extracellular,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.