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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 2
  • cytosol 3
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70005
CDX70006
CDX75921
CDX82366
CDX84840
CDX90240
CDX92136
CDX92464
CDX95849
CDX99009
CDX99010
CDY02060
CDY04828
CDY05014
CDY10342
CDY10690
CDY14057
CDY24005
CDY26276
CDY29680
CDY35487
CDY40835
CDY49976
CDY54010
CDY56859
CDY63182
CDY68071

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G01420.1 CDX90240 AT1G30270.1 16814720
AT4G01420.1 CDY26276 AT1G30270.1 16814720
AT4G01420.1 CDY49976 AT1G30270.1 16814720
AT4G01420.1 CDY63182 AT1G30270.1 16814720
AT4G01420.1 CDX84840 AT2G30360.1 11230129
AT4G01420.1 CDY02060 AT2G30360.1 11230129
AT4G01420.1 CDY24005 AT2G30360.1 11230129
AT4G01420.1 CDY29680 AT2G30360.1 11230129
AT4G01420.1 CDY54010 AT2G30360.1 11230129
AT4G01420.1 CDY68071 AT2G30360.1 11230129
AT4G01420.1 CDX75921 AT3G17510.1 11230129
AT4G01420.1 CDX82366 AT3G17510.1 11230129
AT4G01420.1 CDX92136 AT3G17510.1 11230129
AT4G01420.1 CDX95849 AT3G17510.1 11230129
AT4G01420.1 CDY10342 AT3G23000.1 11230129
AT4G01420.1 CDY10690 AT3G23000.1 11230129
AT4G01420.1 CDY35487 AT3G23000.1 11230129
AT4G01420.1 CDY40835 AT3G23000.1 11230129
AT4G01420.1 CDX92464 AT4G01420.1 11402167
AT4G01420.1 CDY56859 AT4G01420.1 11402167
AT4G01420.1 CDY04828 AT5G01820.1 11230129
AT4G01420.1 CDX70005 AT5G07070.1 11230129
AT4G01420.1 CDX70006 AT5G07070.1 11230129
AT4G01420.1 CDX99009 AT5G07070.1 11230129
AT4G01420.1 CDX99010 AT5G07070.1 11230129
AT4G01420.1 CDY05014 AT5G07070.1 11230129
AT4G01420.1 CDY14057 AT5G07070.1 11230129
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX92464 Canola cytosol 95.61 95.61
AT4G01420.1 Thale cress cytosol 82.93 83.74
PGSC0003DMT400014960 Potato cytosol 35.12 60.5
CDY62266 Canola cytosol 13.17 56.25
CDY19840 Canola cytosol 52.68 49.54
CDY67196 Canola cytosol 16.59 48.57
CDX80425 Canola cytosol 52.2 48.42
CDX90465 Canola cytosol 49.76 47.89
CDY09616 Canola cytosol 49.76 47.89
CDY59968 Canola cytosol, plasma membrane 51.22 47.51
CDY44281 Canola cytosol 51.22 47.51
CDY38412 Canola cytosol 49.27 47.42
CDY40580 Canola cytosol 48.78 46.95
CDY28977 Canola cytosol 48.78 46.95
CDX78784 Canola cytosol 48.78 46.95
CDX87133 Canola cytosol 49.27 46.76
KRH60052 Soybean cytosol 52.2 46.52
CDY25987 Canola cytosol 48.29 46.48
CDY69850 Canola cytosol 48.29 46.48
PGSC0003DMT400014962 Potato cytosol 21.46 44.9
KRH41326 Soybean cytosol 51.22 44.68
CDY64981 Canola cytosol 46.83 42.48
CDY06547 Canola cytosol 46.83 42.48
CDX89324 Canola cytosol 46.83 42.48
CDX94315 Canola cytosol 46.83 42.48
CDY42728 Canola cytosol 46.83 42.48
CDX92814 Canola cytosol 46.83 42.48
CDY64882 Canola mitochondrion 43.41 41.59
CDY46533 Canola mitochondrion 43.41 41.59
CDY11963 Canola cytosol 46.83 40.34
CDY36774 Canola cytosol 46.34 39.92
VIT_02s0025g01630.t01 Wine grape cytosol 50.73 39.54
CDY32236 Canola cytosol, extracellular 41.46 37.44
CDY13513 Canola endoplasmic reticulum, nucleus, plasma membrane 39.02 36.87
CDY04300 Canola cytosol 23.41 36.64
CDY34452 Canola cytosol, extracellular 40.49 36.56
CDY45024 Canola cytosol 42.93 35.77
CDY28278 Canola cytosol 42.44 35.37
CDX75314 Canola cytosol, endoplasmic reticulum 42.44 34.94
CDX68929 Canola cytosol, endoplasmic reticulum, mitochondrion 42.44 34.94
CDX72384 Canola cytosol 44.88 34.46
CDX89325 Canola plastid 40.49 30.18
CDX94316 Canola plastid 37.07 27.54
Protein Annotations
EnsemblPlants:CDY56859EnsemblPlantsGene:GSBRNA2T00020196001Gene3D:1.10.238.10GO:A0A078J3A0GO:GO:0003674GO:GO:0005488
GO:GO:0005509InterPro:EF-hand-dom_pairInterPro:EF_hand_domInterPro:IPR002048PANTHER:PTHR23056PANTHER:PTHR23056:SF85
PFAM:PF13499PFscan:PS50222PRINTS:PR00450ProteinID:CDY56859ProteinID:CDY56859.1SMART:SM00054
SUPFAM:SSF47473UniParc:UPI0004EDC21CUniProt:A0A078J3A0MapMan:35.1::
Description
BnaC09g54100DBnaC09g54100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J3A0]
Coordinates
chrLK033525:-:21195..23554
Molecular Weight (calculated)
23769.5 Da
IEP (calculated)
4.905
GRAVY (calculated)
-0.282
Length
205 amino acids
Sequence
(BLAST)
001: MGCVCSKHLG GTRTRHENIS LLASQTFFSD AEVEVLHELF TKLTSCVSSD NLITKEGFQF ILTKDTKRRS LSTERMFGLF DMRNDEAIDF GEFVHSLNIF
101: HPNSTQRDKA LFAFRLYDTR QTGFIEPEEV KEMIIDVLEE SELMLTESII DSIVSKTFEE ADRKKDGKID LEEWENFVAR HPLILKNMTI PFLKDLPRTF
201: PCFLQ
Best Arabidopsis Sequence Match ( AT4G01420.1 )
(BLAST)
001: MGCVCSKQLE GRRQEDISLL ASQTFFSEAE VEVLHGLFIK LTSCLSNDNL LTKEKFQFIL IKNTKKRSLS AERIFGLFDM RNDGAIDFGE FVHTLNIFHP
101: NSSPRDKAIF AFRLYDTRET GFIEPEEVKE MIIDVLEESE LMLSESIIDS IVSKTFEEAD WKKDGIIDLE EWENFVATYP LTLKNMTIPF LKDIPRIFPT
201: FLR
Arabidopsis Description
CBL5Calcineurin B-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q7FZF1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.