Factsheet for PGSC0003DMT400014960

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400011724
PGSC0003DMT400014960
PGSC0003DMT400014962
PGSC0003DMT400015582
PGSC0003DMT400028840
PGSC0003DMT400034837
PGSC0003DMT400052958
PGSC0003DMT400052998
PGSC0003DMT400056629
PGSC0003DMT400069822
PGSC0003DMT400078266
PGSC0003DMT400080484

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G01420.1	PGSC0003DMT400080484	AT1G30270.1	16814720
AT4G01420.1	PGSC0003DMT400052998	AT2G30360.1	11230129
AT4G01420.1	PGSC0003DMT400078266	AT2G30360.1	11230129
AT4G01420.1	PGSC0003DMT400011724	AT3G17510.1	11230129
AT4G01420.1	PGSC0003DMT400069822	AT3G17510.1	11230129
AT4G01420.1	PGSC0003DMT400015582	AT3G23000.1	11230129
AT4G01420.1	PGSC0003DMT400034837	AT3G23000.1	11230129
AT4G01420.1	PGSC0003DMT400014960	AT4G01420.1	11402167
AT4G01420.1	PGSC0003DMT400014962	AT4G01420.1	11402167
AT4G01420.1	PGSC0003DMT400028840	AT5G01820.1	11230129
AT4G01420.1	PGSC0003DMT400056629	AT5G01820.1	11230129
AT4G01420.1	PGSC0003DMT400052958	AT5G07070.1	11230129

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014962	Potato	cytosol	66.39	80.61
Bra002301.1-P	Field mustard	cytosol	45.38	49.09
CDX92464	Canola	cytosol	61.34	35.61
CDY56859	Canola	cytosol	60.5	35.12
AT4G01420.1	Thale cress	cytosol	58.82	34.48
PGSC0003DMT400023568	Potato	cytosol	60.5	33.64
KRH60052	Soybean	cytosol	63.87	33.04
KRH41326	Soybean	cytosol	63.03	31.91
PGSC0003DMT400046089	Potato	cytosol	52.1	31.79
PGSC0003DMT400050430	Potato	cytosol	56.3	31.31
PGSC0003DMT400068352	Potato	cytosol	56.3	31.16
PGSC0003DMT400011576	Potato	cytosol	54.62	30.52
VIT_02s0025g01630.t01	Wine grape	cytosol	65.55	29.66
PGSC0003DMT400057342	Potato	cytosol, extracellular	53.78	29.22
PGSC0003DMT400037245	Potato	cytosol	53.78	28.83
PGSC0003DMT400076653	Potato	cytosol	53.78	28.57
PGSC0003DMT400088667	Potato	cytosol	52.1	27.68
PGSC0003DMT400076980	Potato	mitochondrion	56.3	23.1
PGSC0003DMT400052805	Potato	cytosol	50.42	22.99

Protein Annotations

EnsemblPlants:PGSC0003DMT400014960	EnsemblPlantsGene:PGSC0003DMG400005840	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR23056	PANTHER:PTHR23056:SF85
PFAM:PF13202	PFscan:PS50222	PGSC:PGSC0003DMG400005840	PRINTS:PR00450	ScanProsite:PS00018	SMART:SM00054
SUPFAM:SSF47473	UniParc:UPI000295BA91	UniProt:M1A567	MapMan:35.1	:	:

Description

Calcineurin B [Source:PGSC_GENE;Acc:PGSC0003DMG400005840]

Coordinates

chr8:-:5157897..5159434

Molecular Weight (calculated)

13611.3 Da

IEP (calculated)

4.243

GRAVY (calculated)

-0.002

Length

119 amino acids

Sequence
(BLAST)

001: MFNLFDSNKD GLIDVGEFIR TLSIFHPDAS QAEKIVVAFK LYDIWQTGFI GREEVKELIF GLLYESELIL TDNIVEVIIN KTIEEADSKG DGKIDIEEWS
101: NFVAHNPSLL KNMTIPYLK

Best Arabidopsis Sequence Match ( AT5G24270.1 )
(BLAST)

001: MGCSVSKKKK KNAMRPPGYE DPELLASVTP FTVEEVEALY ELFKKLSSSI IDDGLIHKEE FQLALFRNRN RRNLFADRIF DVFDVKRNGV IEFGEFVRSL
101: GVFHPSAPVH EKVKFAFKLY DLRQTGFIER EELKEMVVAL LHESELVLSE DMIEVMVDKA FVQADRKNDG KIDIDEWKDF VSLNPSLIKN MTLPYLKDIN
201: RTFPSFVSSC EEEEMELQNV SS

Arabidopsis Description

CBL4Calcineurin B-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:O81223]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.