Factsheet for PGSC0003DMT400052805

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400007475
PGSC0003DMT400011724
PGSC0003DMT400016336
PGSC0003DMT400019062
PGSC0003DMT400020443
PGSC0003DMT400029044
PGSC0003DMT400039777
PGSC0003DMT400052958
PGSC0003DMT400052998
PGSC0003DMT400069822
PGSC0003DMT400073132
PGSC0003DMT400078266
PGSC0003DMT400080484

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47100.1	PGSC0003DMT400080484	AT1G30270.1	14730064
AT5G47100.1	PGSC0003DMT400080484	AT1G30270.1	16814720
AT5G47100.1	PGSC0003DMT400080484	AT1G30270.1	17898163
AT5G47100.1	PGSC0003DMT400011724	AT1G48260.1	14730064
AT5G47100.1	PGSC0003DMT400069822	AT1G48260.1	14730064
AT5G47100.1	PGSC0003DMT400019062	AT2G25090.1	14730064
AT5G47100.1	PGSC0003DMT400019062	AT2G25090.1	17898163
AT5G47100.1	PGSC0003DMT400052998	AT2G30360.1	14730064
AT5G47100.1	PGSC0003DMT400078266	AT2G30360.1	14730064
AT5G47100.1	PGSC0003DMT400052998	AT2G30360.1	21798944
AT5G47100.1	PGSC0003DMT400078266	AT2G30360.1	21798944
AT5G47100.1	PGSC0003DMT400039777	AT3G15090.1	21798944
AT5G47100.1	PGSC0003DMT400011724	AT3G17510.1	14730064
AT5G47100.1	PGSC0003DMT400069822	AT3G17510.1	14730064
AT5G47100.1	PGSC0003DMT400011724	AT3G17510.1	17092313
AT5G47100.1	PGSC0003DMT400069822	AT3G17510.1	17092313
AT5G47100.1	PGSC0003DMT400073132	AT4G18700.1	14730064
AT5G47100.1	PGSC0003DMT400016336	AT4G24400.1	14730064
AT5G47100.1	PGSC0003DMT400020443	AT4G30960.1	17898163
AT5G47100.1	PGSC0003DMT400029044	AT4G30960.1	17898163
AT5G47100.1	PGSC0003DMT400019062	AT5G10930.1	14730064
AT5G47100.1	PGSC0003DMT400007475	AT5G35410.1	14730064
AT5G47100.1	PGSC0003DMT400052958	AT5G58380.1	14730064

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g007160.2.1	Tomato	cytosol	75.48	91.63
PGSC0003DMT400011576	Potato	cytosol	61.69	75.59
PGSC0003DMT400068352	Potato	cytosol	58.24	70.7
Bra012655.1-P	Field mustard	cytosol	57.47	70.42
CDX90465	Canola	cytosol	57.47	70.42
GSMUA_AchrUn_...	Banana	cytosol	57.47	70.42
GSMUA_Achr4P30070_001	Banana	cytosol	57.47	70.42
Bra040169.1-P	Field mustard	cytosol	56.7	69.48
CDY09616	Canola	cytosol	56.7	69.48
CDY38412	Canola	cytosol	56.7	69.48
GSMUA_Achr4P26350_001	Banana	cytosol	56.7	69.48
CDX78784	Canola	cytosol	56.32	69.01
Zm00001d029976_P004	Maize	cytosol, mitochondrion	55.56	68.08
EER94470	Sorghum	cytosol	55.56	68.08
KRH57533	Soybean	mitochondrion	54.79	67.14
Os10t0564800-01	Rice	plasma membrane	54.79	67.14
HORVU1Hr1G055300.1	Barley	cytosol	55.17	66.98
TraesCSU01G178500.1	Wheat	cytosol	55.17	66.98
TraesCS1B01G229300.1	Wheat	cytosol	55.17	66.98
TraesCS1A01G215800.1	Wheat	cytosol	55.17	66.98
AT5G47100.1	Thale cress	cytosol	54.02	66.2
CDY40580	Canola	cytosol	53.64	65.73
Bra017504.1-P	Field mustard	cytosol	53.64	65.73
Bra022104.1-P	Field mustard	cytosol	53.64	65.73
CDY25987	Canola	cytosol	53.64	65.73
CDY28977	Canola	cytosol	53.64	65.73
CDY69850	Canola	cytosol	53.64	65.73
TraesCSU01G129500.1	Wheat	cytosol, mitochondrion	52.87	63.89
TraesCS5A01G545500.2	Wheat	cytosol	52.11	63.26
HORVU4Hr1G090270.10	Barley	cytosol	52.49	63.13
KRH28207	Soybean	cytosol	50.19	61.79
Zm00001d000046_P001	Maize	cytosol	41.38	61.36
TraesCS4B01G379200.1	Wheat	cytosol	47.51	61.08
KRH04244	Soybean	cytosol	50.57	60.27
AT4G17615.3	Thale cress	cytosol	55.56	57.54
PGSC0003DMT400050430	Potato	cytosol	45.98	56.07
PGSC0003DMT400023568	Potato	cytosol	45.21	55.14
PGSC0003DMT400057342	Potato	cytosol, extracellular	45.98	54.79
PGSC0003DMT400037245	Potato	cytosol	45.59	53.6
PGSC0003DMT400076653	Potato	cytosol	44.83	52.23
PGSC0003DMT400014960	Potato	cytosol	22.99	50.42
PGSC0003DMT400046089	Potato	cytosol	36.78	49.23
PGSC0003DMT400088667	Potato	cytosol	40.23	46.88
PGSC0003DMT400014962	Potato	cytosol	15.33	40.82
PGSC0003DMT400076980	Potato	mitochondrion	41.38	37.24

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:102593315	MapMan:35.1	ncoils:Coil	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_dom	InterPro:EH_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005515
InterPro:IPR000261	InterPro:IPR002048	UniProt:M1BTZ9	PFAM:PF12763	PFAM:PF13499	EnsemblPlantsGene:PGSC0003DMG400020493
PGSC:PGSC0003DMG400020493	EnsemblPlants:PGSC0003DMT400052805	PRINTS:PR00450	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR23056
PANTHER:PTHR23056:SF41	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI000296A849	:	:

Description

Calcineurin B 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400020493]

Coordinates

chr8:+:1062935..1068924

Molecular Weight (calculated)

30358.4 Da

IEP (calculated)

5.607

GRAVY (calculated)

-0.244

Length

261 amino acids

Sequence
(BLAST)

001: MGCFSSKVAR GHQFPGYEDP IFLASRTAFT VSEVQALFEM FKTISSTVID DGLISKEEFQ LALFENRKKE DLLANRIFDL FDLKQRGVVD FEDFVMAMNV
101: FHPNASQEDK LTFSFKLYDL DGSGYIERQE VKQMLIALLR ESEMKLADET IEIILDKTFS EADSNQDGKI DKSEWRSFVD RNPSLLKIMT LPYLRYNIYH
201: LISDTHLNDE SIRSHLSVVA YVTRILQKCC EHVSDPLEVM HFLRISHKCQ TIFGKFEKHR L

Best Arabidopsis Sequence Match ( AT4G17615.3 )
(BLAST)

001: MGCFHSKAAK EFRGHEDPVK LASETAFSVS EVEALFELFK SISSSVVDDG LINKEEFQLA LFKSRKRENI FANRIFDMFD VKRKGVIDFG DFVRSLNVFH
101: PNASLEDKID FTFRLYDMDC TGYIERQEVK QMLIALLCES EMKLADETIE IILDKTFEDA DVNQDGKIDK LEWSDFVNKN PSLLKIMTLP YLRYITNCLL
201: WKPKKTEKCQ MKCHINLYIN NAGILRQRFR VLSSIRRSMR LPHEETNWFK TE

Arabidopsis Description

CBL1calcineurin B-like protein 1 [Source:TAIR;Acc:AT4G17615]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.