Factsheet for PGSC0003DMT400039777

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
peroxisome 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400018952

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15090.1	PGSC0003DMT400018952	AT5G49010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g014050.1.1	Tomato	plastid	97.0	89.9
VIT_19s0014g01890.t01	Wine grape	mitochondrion	76.57	77.84
Os01t0753100-01	Rice	mitochondrion	72.75	73.15
GSMUA_Achr8P27200_001	Banana	mitochondrion	73.02	72.63
Zm00001d043432_P001	Maize	mitochondrion	70.57	71.35
GSMUA_Achr3P15520_001	Banana	mitochondrion	71.39	71.2
KRH27297	Soybean	mitochondrion	70.57	71.15
TraesCS3B01G326600.1	Wheat	mitochondrion	68.66	69.42
HORVU3Hr1G072320.2	Barley	mitochondrion	68.39	69.15
TraesCS3D01G291700.2	Wheat	mitochondrion	68.12	68.87
TraesCS3A01G292000.1	Wheat	mitochondrion	68.12	68.87
AT3G15090.1	Thale cress	mitochondrion	68.66	68.85
Bra027280.1-P	Field mustard	mitochondrion	68.39	68.77
CDX82448	Canola	mitochondrion	65.4	68.57
Bra001583.1-P	Field mustard	mitochondrion	65.12	68.29
CDX75808	Canola	mitochondrion	64.58	67.71
KRH22019	Soybean	mitochondrion	68.39	64.86
KXG33382	Sorghum	plastid	71.39	62.53
CDX97630	Canola	plastid	69.21	40.13
CDX98523	Canola	plastid	68.94	39.97
PGSC0003DMT400044064	Potato	cytosol	26.43	29.48
PGSC0003DMT400062565	Potato	cytosol, peroxisome, plastid	26.16	29.18
PGSC0003DMT400022514	Potato	cytosol	24.8	27.58
PGSC0003DMT400044065	Potato	cytosol	23.98	26.51
PGSC0003DMT400079606	Potato	cytosol	27.52	26.03
PGSC0003DMT400055608	Potato	cytosol, peroxisome, plastid	21.8	24.46
PGSC0003DMT400057744	Potato	cytosol	19.89	22.46
PGSC0003DMT400090732	Potato	plastid	10.35	17.27

Protein Annotations

EntrezGene:102581800	Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:35.1	InterPro:ADH_N	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:GroES-like_sf
UniProt:M1B8R6	InterPro:NAD(P)-bd_dom_sf	PFAM:PF08240	PFAM:PF13602	EnsemblPlantsGene:PGSC0003DMG400015372	PGSC:PGSC0003DMG400015372
EnsemblPlants:PGSC0003DMT400039777	InterPro:PKS_ER	PANTHER:PTHR43482	PANTHER:PTHR43482:SF1	SMART:SM00829	SUPFAM:SSF50129
SUPFAM:SSF51735	UniParc:UPI00029586FE	RefSeq:XP_006358962.1	:	:	:

Description

Zinc binding dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400015372]

Coordinates

chr12:+:421015..429378

Molecular Weight (calculated)

39475.7 Da

IEP (calculated)

7.713

GRAVY (calculated)

0.001

Length

367 amino acids

Sequence
(BLAST)

001: MIRLISRRIE IGTGDGGISN LGFDKRGIVT SCRAVLLPRF GGPEVLEFRD NVAVPDLKPN QVLVRARAVS INPLDTRMRS GYGRSIFEPL LPLILGRDIS
101: GEVAAVGNSV KSLTVGQEVF GALHPTAVRG TYTDYAILAE DELAPKPGSL SHAEASAIPF AALTAWRALK STARIREGHR VLVIGGGGAV GFSAIQLAVA
201: ADCHVSTTCG GESISRILAA GAEQAVDYTI EDAEVALKGH FDAVLDTIGV PDTERMGISL LKKGGHYMTL QGEAASVTDR HGLAIGLPMA AAILLKKQIQ
301: YRYSHGIEYW WNYMRADAEG LHEIRRLSEA GKLQVPVDKT FPISQVREAH EAKDRRQIPG KVVLEID

Best Arabidopsis Sequence Match ( AT3G15090.1 )
(BLAST)

001: MRVMRSLRGN SGAGLVFRPA RLNSLRSVFT GCRAVILPRF GGPEVFELRE NVPVPNLNPN EVLVKAKAVS VNPLDCRIRA GYGRSVFQPH LPIIVGRDVS
101: GEVAAIGTSV KSLKVGQEVF GALHPTALRG TYTDYGILSE DELTEKPSSI SHVEASAIPF AALTAWRALK SNARITEGQR LLVFGGGGAV GFSAIQLAVA
201: SGCHVTASCV GQTKDRILAA GAEQAVDYTT EDIELAVKGK FDAVLDTIGG PETERIGINF LRKGGNYMTL QGEAASLTDK YGFVVGLPLA TSLLMKKKIQ
301: YQYSHGIDYW WTYMRADPEG LAEIQRLVGA GKLKIPVEKT FPITDVVAAH EAKEKKQIPG KVVLEF

Arabidopsis Description

AT3g15090/K15M2_24 [Source:UniProtKB/TrEMBL;Acc:Q9LK96]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.