Factsheet for PGSC0003DMT400018952

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g065900.1.1	Tomato	nucleus	99.55	99.55
VIT_05s0077g00800.t01	Wine grape	nucleus	69.06	70.0
VIT_05s0077g00120.t01	Wine grape	cytosol	54.71	67.03
GSMUA_Achr5P21600_001	Banana	cytosol	62.33	63.76
KRH44169	Soybean	nucleus	63.23	62.39
HORVU3Hr1G090890.3	Barley	nucleus	43.5	61.78
TraesCS3A01G405500.1	Wheat	cytosol	60.09	61.75
TraesCS3B01G439200.1	Wheat	cytosol	60.09	61.75
TraesCS3D01G400700.1	Wheat	cytosol	60.09	61.75
EES18994	Sorghum	nucleus	59.19	61.4
Os05t0143400-01	Rice	nucleus	59.19	60.0
KRH47145	Soybean	cytosol	57.4	59.81
AT5G49010.1	Thale cress	cytosol	56.05	56.82
Bra037442.1-P	Field mustard	nucleus	52.02	52.97
CDX86259	Canola	nucleus	52.02	52.97
CDX85387	Canola	nucleus	52.02	52.97
Zm00001d006788_P001	Maize	nucleus	44.39	51.83
VIT_05s0077g00290.t01	Wine grape	cytosol	21.52	49.48
Zm00001d024805_P001	Maize	cytosol	27.35	47.29
Zm00001d010541_P001	Maize	cytosol	26.91	38.71

Protein Annotations

Gene3D:1.20.58.1030	EntrezGene:102596612	MapMan:13.2.2.5.4	ncoils:Coil	InterPro:GINS_A	InterPro:GINS_Sld5
InterPro:GINS_bundle-like_dom_sf	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006260	GO:GO:0006261	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	UniProt:M1ABE8	PFAM:PF05916	PFAM:PF16922	EnsemblPlantsGene:PGSC0003DMG400007347	PGSC:PGSC0003DMG400007347
EnsemblPlants:PGSC0003DMT400018952	PIRSF:PIRSF007764	PANTHER:PTHR21206	InterPro:SLD5_C	SUPFAM:SSF158573	SUPFAM:SSF160059
InterPro:Sld5_GINS_A	UniParc:UPI000295E124	RefSeq:XP_006361744.1	:	:	:

Description

SLD5 [Source:PGSC_GENE;Acc:PGSC0003DMG400007347]

Coordinates

chr11:+:38207054..38211699

Molecular Weight (calculated)

25629.1 Da

IEP (calculated)

4.470

GRAVY (calculated)

-0.594

Length

223 amino acids

Sequence
(BLAST)

001: MDSGDASGYS AGVDDDYESL LSTTDAELLK RAWRNEKAAP EILQYETALV QRSREQIQLM EETVEEFSKN GVDPLTLSLY QMDLDRTLFL LRSYLRTRLQ
101: KIENYAFHIQ KNTDLWNRLS KQEQKFAERC IDDTEQHLDQ SVLSKLPHGF KSHLKQSSLS LADDMVPEPQ LDQYVICRSK KFLGSFQLDD SGEEPVNIEA
201: NDLYALPYKS IKPLVESGQI DLV

Best Arabidopsis Sequence Match ( AT5G49010.1 )
(BLAST)

001: MASNSEAGGS ADYETLMSTS DVELLKRAWR NEKAAPEILQ YEGALVDRAK EQIELVEETI EDYVENGIDP LVVSLYQMDL DRAQFLLRSY LRVRLLKIEK
101: FMFHNLNSEE AERRLSEQEK VFATRCADDL AKHFEETVLL KLPENYQSVL KQSLISEVDD MVPQPHLDTF VVCRSKNFVS LNLYEEGESP ETVEMERGDL
201: YFIRYKIVKR AIESGQIDLI

Arabidopsis Description

SLD5DNA replication complex GINS protein SLD5 [Source:UniProtKB/TrEMBL;Acc:A0A178UAX9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.