Factsheet for Solyc11g065900.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018952	Potato	nucleus	99.55	99.55
VIT_05s0077g00800.t01	Wine grape	nucleus	69.06	70.0
VIT_05s0077g00120.t01	Wine grape	cytosol	54.71	67.03
GSMUA_Achr5P21600_001	Banana	cytosol	62.33	63.76
KRH44169	Soybean	nucleus	62.78	61.95
HORVU3Hr1G090890.3	Barley	nucleus	43.5	61.78
TraesCS3A01G405500.1	Wheat	cytosol	60.09	61.75
TraesCS3B01G439200.1	Wheat	cytosol	60.09	61.75
TraesCS3D01G400700.1	Wheat	cytosol	60.09	61.75
EES18994	Sorghum	nucleus	59.19	61.4
Os05t0143400-01	Rice	nucleus	59.19	60.0
KRH47145	Soybean	cytosol	56.95	59.35
AT5G49010.1	Thale cress	cytosol	55.61	56.36
Bra037442.1-P	Field mustard	nucleus	51.57	52.51
CDX86259	Canola	nucleus	51.57	52.51
CDX85387	Canola	nucleus	51.57	52.51
Zm00001d006788_P001	Maize	nucleus	44.39	51.83
VIT_05s0077g00290.t01	Wine grape	cytosol	21.52	49.48
Zm00001d024805_P001	Maize	cytosol	27.35	47.29
Zm00001d010541_P001	Maize	cytosol	26.91	38.71

Protein Annotations

Gene3D:1.20.58.1030	MapMan:13.2.2.5.4	ncoils:Coil	InterPro:GINS_A	InterPro:GINS_Sld5	InterPro:GINS_bundle-like_dom_sf
GO:GO:0000727	GO:GO:0000811	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260
GO:GO:0006261	GO:GO:0006270	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0031298	GO:GO:0032508	GO:GO:0043138
UniProt:K4D9J9	PFAM:PF05916	PFAM:PF16922	PIRSF:PIRSF007764	PANTHER:PTHR21206	InterPro:SLD5_C
SUPFAM:SSF158573	SUPFAM:SSF160059	InterPro:Sld5_GINS_A	EnsemblPlantsGene:Solyc11g065900.1	EnsemblPlants:Solyc11g065900.1.1	UniParc:UPI0002769C93

Description

DNA replication complex GINS protein SLD5 [Source:UniProtKB/TrEMBL;Acc:K4D9J9]

Coordinates

chr11:+:51488423..51490771

Molecular Weight (calculated)

25603.1 Da

IEP (calculated)

4.530

GRAVY (calculated)

-0.602

Length

223 amino acids

Sequence
(BLAST)

001: MDSGDASGYS AGVDDDYESL LSTTDAELLK RAWRNEKAAP EILQHETALV QRSREQIQLM EETVEEFSKN GVDPLTLSLY QMDLDRTLFL LRSYLRTRLQ
101: KIENYAFHIQ KNTDLWNRLS KQEQKFAERC IDDTEQHLDQ SVLSKLPHGF KSHLKQSSLS LADDMVPEPQ LDQYVICRSK KFLGSFQLDD SGEEPVNIEA
201: NDLYALPYKS IKPLVESGQI DLV

Best Arabidopsis Sequence Match ( AT5G49010.1 )
(BLAST)

001: MASNSEAGGS ADYETLMSTS DVELLKRAWR NEKAAPEILQ YEGALVDRAK EQIELVEETI EDYVENGIDP LVVSLYQMDL DRAQFLLRSY LRVRLLKIEK
101: FMFHNLNSEE AERRLSEQEK VFATRCADDL AKHFEETVLL KLPENYQSVL KQSLISEVDD MVPQPHLDTF VVCRSKNFVS LNLYEEGESP ETVEMERGDL
201: YFIRYKIVKR AIESGQIDLI

Arabidopsis Description

SLD5DNA replication complex GINS protein SLD5 [Source:UniProtKB/TrEMBL;Acc:A0A178UAX9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.