Factsheet for VIT_05s0077g00120.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0077g00800.t01	Wine grape	nucleus	96.7	80.0
GSMUA_Achr5P21600_001	Banana	cytosol	72.53	60.55
Os05t0143400-01	Rice	nucleus	69.23	57.27
TraesCS3B01G439200.1	Wheat	cytosol	68.13	57.14
TraesCS3D01G400700.1	Wheat	cytosol	67.58	56.68
TraesCS3A01G405500.1	Wheat	cytosol	67.58	56.68
EES18994	Sorghum	nucleus	65.93	55.81
PGSC0003DMT400018952	Potato	nucleus	67.03	54.71
Solyc11g065900.1.1	Tomato	nucleus	67.03	54.71
HORVU3Hr1G090890.3	Barley	nucleus	45.05	52.23
AT5G49010.1	Thale cress	cytosol	58.24	48.18
CDX85387	Canola	nucleus	57.69	47.95
Bra037442.1-P	Field mustard	nucleus	57.14	47.49
CDX86259	Canola	nucleus	57.14	47.49
KRH44169	Soybean	nucleus	57.69	46.46
KRH47145	Soybean	cytosol	51.65	43.93
Zm00001d006788_P001	Maize	nucleus	43.96	41.88
VIT_05s0077g00290.t01	Wine grape	cytosol	16.48	30.93
Zm00001d024805_P001	Maize	cytosol	21.43	30.23
Zm00001d010541_P001	Maize	cytosol	24.73	29.03

Protein Annotations

Gene3D:1.20.58.1030	MapMan:13.2.2.5.4	ProteinID:CCB47935	ProteinID:CCB47935.1	UniProt:F6H6X2	EMBL:FN595246
InterPro:GINS_A	InterPro:GINS_Sld5	InterPro:GINS_bundle-like_dom_sf	GO:GO:0000727	GO:GO:0000811	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006261	GO:GO:0006270	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0031298	GO:GO:0032508	GO:GO:0043138	PFAM:PF05916	PFAM:PF16922	PIRSF:PIRSF007764
PANTHER:PTHR21206	InterPro:SLD5_C	SUPFAM:SSF158573	SUPFAM:SSF160059	InterPro:Sld5_GINS_A	UniParc:UPI0002108D12
ArrayExpress:VIT_05s0077g00120	EnsemblPlantsGene:VIT_05s0077g00120	EnsemblPlants:VIT_05s0077g00120.t01	RefSeq:XP_002274677	RefSeq:XP_002274677.2	:

Description

DNA replication complex GINS protein SLD5 [Source:UniProtKB/TrEMBL;Acc:F6H6X2]

Coordinates

chr5:+:65523..83234

Molecular Weight (calculated)

21377.3 Da

IEP (calculated)

4.287

GRAVY (calculated)

-0.482

Length

182 amino acids

Sequence
(BLAST)

001: MNEKAAPEIL HFQTREQIQL MEETVEEFGE NGTDPLTVSL YQMNLDRTQF LLRSYLQIRL QKIEKYMFHI LKTDVWSWLS EQEQKFAKRC TDDMERHLEQ
101: SVLSRLPDGY QSILKQSVAS EEDDMVPEPR LDTFVFYKSK GSIEAFQLDD SKEVVDLVAD DLYILRYNSV NPLIESGQID LV

Best Arabidopsis Sequence Match ( AT5G49010.1 )
(BLAST)

001: MASNSEAGGS ADYETLMSTS DVELLKRAWR NEKAAPEILQ YEGALVDRAK EQIELVEETI EDYVENGIDP LVVSLYQMDL DRAQFLLRSY LRVRLLKIEK
101: FMFHNLNSEE AERRLSEQEK VFATRCADDL AKHFEETVLL KLPENYQSVL KQSLISEVDD MVPQPHLDTF VVCRSKNFVS LNLYEEGESP ETVEMERGDL
201: YFIRYKIVKR AIESGQIDLI

Arabidopsis Description

SLD5DNA replication complex GINS protein SLD5 [Source:UniProtKB/TrEMBL;Acc:A0A178UAX9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.