Factsheet for GSMUA_Achr5P21600_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G439200.1	Wheat	cytosol	73.39	73.73
TraesCS3A01G405500.1	Wheat	cytosol	72.94	73.27
TraesCS3D01G400700.1	Wheat	cytosol	72.94	73.27
Os05t0143400-01	Rice	nucleus	73.39	72.73
VIT_05s0077g00120.t01	Wine grape	cytosol	60.55	72.53
EES18994	Sorghum	nucleus	71.1	72.09
VIT_05s0077g00800.t01	Wine grape	nucleus	70.64	70.0
HORVU3Hr1G090890.3	Barley	nucleus	48.17	66.88
PGSC0003DMT400018952	Potato	nucleus	63.76	62.33
Solyc11g065900.1.1	Tomato	nucleus	63.76	62.33
KRH44169	Soybean	nucleus	58.72	56.64
KRH47145	Soybean	cytosol	55.05	56.07
Zm00001d006788_P001	Maize	nucleus	49.08	56.02
CDX85387	Canola	nucleus	54.59	54.34
AT5G49010.1	Thale cress	cytosol	54.59	54.09
Bra037442.1-P	Field mustard	nucleus	53.67	53.42
CDX86259	Canola	nucleus	53.67	53.42
Zm00001d024805_P001	Maize	cytosol	28.9	48.84
Zm00001d010541_P001	Maize	cytosol	29.82	41.94
VIT_05s0077g00290.t01	Wine grape	cytosol	17.43	39.18

Protein Annotations

Gene3D:1.20.58.1030	MapMan:13.2.2.5.4	ncoils:Coil	InterPro:GINS_A	InterPro:GINS_Sld5	InterPro:GINS_bundle-like_dom_sf
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006260	GO:GO:0006261	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSMUA_Achr5G21600_001	EnsemblPlants:GSMUA_Achr5P21600_001	EnsemblPlants:GSMUA_Achr5T21600_001	UniProt:M0T0I5	PFAM:PF05916	PFAM:PF16922
PIRSF:PIRSF007764	PANTHER:PTHR21206	InterPro:SLD5_C	SUPFAM:SSF158573	SUPFAM:SSF160059	InterPro:Sld5_GINS_A
UniParc:UPI000294B9A8	SEG:seg	:	:	:	:

Description

Putative DNA replication complex GINS protein SLD5 [Source:GMGC_GENE;Acc:GSMUA_Achr5G21600_001]

Coordinates

chr5:+:23691486..23698676

Molecular Weight (calculated)

25032.8 Da

IEP (calculated)

4.290

GRAVY (calculated)

-0.338

Length

218 amino acids

Sequence
(BLAST)

001: MSGPWSEEAE EDASSLAGTT DVELIKRAWR NEKAAPEILQ FEGPLVLRVR EQIQLLEETV EESTENGSND LVVSLYQMDL DRTLFLLRSY LRIRLQKIEK
101: YMIHISKTNL WNRLSEQEKK FAKRCTEIME KLLEQSVLAR LPYGYESFLK QSISSEEDDM VPEPQLDTFV FCKAKDAVGA FQLDDSGDEI VDLVADDLYV
201: IRYKSIKGLV EAGQIDLV

Best Arabidopsis Sequence Match ( AT5G49010.1 )
(BLAST)

001: MASNSEAGGS ADYETLMSTS DVELLKRAWR NEKAAPEILQ YEGALVDRAK EQIELVEETI EDYVENGIDP LVVSLYQMDL DRAQFLLRSY LRVRLLKIEK
101: FMFHNLNSEE AERRLSEQEK VFATRCADDL AKHFEETVLL KLPENYQSVL KQSLISEVDD MVPQPHLDTF VVCRSKNFVS LNLYEEGESP ETVEMERGDL
201: YFIRYKIVKR AIESGQIDLI

Arabidopsis Description

SLD5DNA replication complex GINS protein SLD5 [Source:UniProtKB/TrEMBL;Acc:A0A178UAX9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.