Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH47145 | Soybean | cytosol | 87.61 | 92.52 |
PGSC0003DMT400018952 | Potato | nucleus | 62.39 | 63.23 |
Solyc11g065900.1.1 | Tomato | nucleus | 61.95 | 62.78 |
VIT_05s0077g00800.t01 | Wine grape | nucleus | 60.18 | 61.82 |
CDX85387 | Canola | nucleus | 57.52 | 59.36 |
Bra037442.1-P | Field mustard | nucleus | 57.08 | 58.9 |
CDX86259 | Canola | nucleus | 57.08 | 58.9 |
GSMUA_Achr5P21600_001 | Banana | cytosol | 56.64 | 58.72 |
AT5G49010.1 | Thale cress | cytosol | 57.08 | 58.64 |
EES18994 | Sorghum | nucleus | 55.75 | 58.6 |
HORVU3Hr1G090890.3 | Barley | nucleus | 40.71 | 58.6 |
VIT_05s0077g00120.t01 | Wine grape | cytosol | 46.46 | 57.69 |
Os05t0143400-01 | Rice | nucleus | 55.75 | 57.27 |
TraesCS3A01G405500.1 | Wheat | cytosol | 54.87 | 57.14 |
TraesCS3D01G400700.1 | Wheat | cytosol | 54.87 | 57.14 |
TraesCS3B01G439200.1 | Wheat | cytosol | 54.42 | 56.68 |
Zm00001d006788_P001 | Maize | nucleus | 44.69 | 52.88 |
VIT_05s0077g00290.t01 | Wine grape | cytosol | 20.35 | 47.42 |
Zm00001d024805_P001 | Maize | cytosol | 23.45 | 41.09 |
Zm00001d010541_P001 | Maize | cytosol | 25.66 | 37.42 |
Protein Annotations
Gene3D:1.20.58.1030 | EntrezGene:100784291 | MapMan:13.2.2.5.4 | EMBL:ACUP02004908 | ncoils:Coil | InterPro:GINS_A |
InterPro:GINS_Sld5 | InterPro:GINS_bundle-like_dom_sf | EnsemblPlantsGene:GLYMA_08G194400 | GO:GO:0000727 | GO:GO:0000811 | GO:GO:0003674 |
GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006260 | GO:GO:0006261 | GO:GO:0006270 | GO:GO:0006950 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 |
GO:GO:0031298 | GO:GO:0032508 | GO:GO:0043138 | UniProt:I1KUV6 | EnsemblPlants:KRH44169 | ProteinID:KRH44169 |
ProteinID:KRH44169.1 | PFAM:PF05916 | PFAM:PF16922 | PIRSF:PIRSF007764 | PANTHER:PTHR21206 | InterPro:SLD5_C |
SUPFAM:SSF158573 | SUPFAM:SSF160059 | InterPro:Sld5_GINS_A | UniParc:UPI0002338B1F | : | : |
Description
hypothetical protein
Coordinates
chr8:-:15651142..15654743
Molecular Weight (calculated)
26144.4 Da
IEP (calculated)
4.667
GRAVY (calculated)
-0.450
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSAAEGV SMDDDYETLI ATTDVELLKR AWRNEKAAPE ILRYESKLVS RVNKVIQLME EIVEEKSSGG TDPLSVSLYQ MDLDRTLFLL RSYLRIRIQK
101: IEKYVFHIQK TEELRNRLSK YEKDFAKMCE NDLEQHLDES VLSKLPKDYK SVLRQSSMSE EDDMVPEPQL DTFVLCRSKE YLTGIQLEDG PVDDRSKLFE
201: MEPGVLHFIC YKSIKALVES GKIDLL
101: IEKYVFHIQK TEELRNRLSK YEKDFAKMCE NDLEQHLDES VLSKLPKDYK SVLRQSSMSE EDDMVPEPQL DTFVLCRSKE YLTGIQLEDG PVDDRSKLFE
201: MEPGVLHFIC YKSIKALVES GKIDLL
001: MASNSEAGGS ADYETLMSTS DVELLKRAWR NEKAAPEILQ YEGALVDRAK EQIELVEETI EDYVENGIDP LVVSLYQMDL DRAQFLLRSY LRVRLLKIEK
101: FMFHNLNSEE AERRLSEQEK VFATRCADDL AKHFEETVLL KLPENYQSVL KQSLISEVDD MVPQPHLDTF VVCRSKNFVS LNLYEEGESP ETVEMERGDL
201: YFIRYKIVKR AIESGQIDLI
101: FMFHNLNSEE AERRLSEQEK VFATRCADDL AKHFEETVLL KLPENYQSVL KQSLISEVDD MVPQPHLDTF VVCRSKNFVS LNLYEEGESP ETVEMERGDL
201: YFIRYKIVKR AIESGQIDLI
Arabidopsis Description
SLD5DNA replication complex GINS protein SLD5 [Source:UniProtKB/TrEMBL;Acc:A0A178UAX9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.