Factsheet for VIT_05s0077g00800.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0077g00120.t01	Wine grape	cytosol	80.0	96.7
GSMUA_Achr5P21600_001	Banana	cytosol	70.0	70.64
TraesCS3B01G439200.1	Wheat	cytosol	68.64	69.59
TraesCS3D01G400700.1	Wheat	cytosol	68.18	69.12
TraesCS3A01G405500.1	Wheat	cytosol	68.18	69.12
PGSC0003DMT400018952	Potato	nucleus	70.0	69.06
Solyc11g065900.1.1	Tomato	nucleus	70.0	69.06
Os05t0143400-01	Rice	nucleus	68.18	68.18
HORVU3Hr1G090890.3	Barley	nucleus	48.64	68.15
EES18994	Sorghum	nucleus	65.45	66.98
VIT_05s0077g00290.t01	Wine grape	cytosol	28.64	64.95
AT5G49010.1	Thale cress	cytosol	61.36	61.36
CDX85387	Canola	nucleus	60.45	60.73
Bra037442.1-P	Field mustard	nucleus	60.0	60.27
CDX86259	Canola	nucleus	60.0	60.27
KRH44169	Soybean	nucleus	61.82	60.18
KRH47145	Soybean	cytosol	55.91	57.48
Zm00001d006788_P001	Maize	nucleus	46.36	53.4
Zm00001d024805_P001	Maize	cytosol	27.27	46.51
Zm00001d010541_P001	Maize	cytosol	28.64	40.65

Protein Annotations

Gene3D:1.20.58.1030	EntrezGene:100243191	wikigene:100243191	EntrezGene:100258508	wikigene:100258508	MapMan:13.2.2.5.4
ProteinID:CBI22867	ProteinID:CBI22867.3	ncoils:Coil	UniProt:D7SYJ7	EMBL:FN595246	InterPro:GINS_A
InterPro:GINS_Sld5	InterPro:GINS_bundle-like_dom_sf	GO:GO:0000727	GO:GO:0000811	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139
GO:GO:0006259	GO:GO:0006260	GO:GO:0006261	GO:GO:0006270	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016787	GO:GO:0031298	GO:GO:0032508	GO:GO:0043138	EntrezGene:LOC100243191	wikigene:LOC100243191
EntrezGene:LOC100258508	wikigene:LOC100258508	PFAM:PF05916	PFAM:PF16922	PIRSF:PIRSF007764	PANTHER:PTHR21206
InterPro:SLD5_C	SUPFAM:SSF158573	SUPFAM:SSF160059	InterPro:Sld5_GINS_A	UniParc:UPI00019832E3	ArrayExpress:VIT_05s0077g00800
EnsemblPlantsGene:VIT_05s0077g00800	EnsemblPlants:VIT_05s0077g00800.t01	unigene:Vvi.22928	RefSeq:XP_002279153	RefSeq:XP_002279153.1	:

Description

DNA replication complex GINS protein SLD5 [Source:UniProtKB/TrEMBL;Acc:D7SYJ7]

Coordinates

chr5:+:602873..610551

Molecular Weight (calculated)

25439.1 Da

IEP (calculated)

4.368

GRAVY (calculated)

-0.477

Length

220 amino acids

Sequence
(BLAST)

001: MASGSEEGSG FPADDYESLI ATTDVELLKR AWRNEKAAPE ILHFQTALVQ RSREQIQLME ETVEEFGENG TDPLTVSLYQ MDLDRTQFLL RSYLRIRLQK
101: IEKYMFHILK TDVWSRLSEQ EQKFAKRCTD DMERHLEQSV LSRLPDGYQS ILKQSVASEE DDMVPEPRLD TFVFCKSKGS IEAFQLDDSK EVVDLVADDL
201: YILRYNSVKP LIESGQIDLV

Best Arabidopsis Sequence Match ( AT5G49010.1 )
(BLAST)

001: MASNSEAGGS ADYETLMSTS DVELLKRAWR NEKAAPEILQ YEGALVDRAK EQIELVEETI EDYVENGIDP LVVSLYQMDL DRAQFLLRSY LRVRLLKIEK
101: FMFHNLNSEE AERRLSEQEK VFATRCADDL AKHFEETVLL KLPENYQSVL KQSLISEVDD MVPQPHLDTF VVCRSKNFVS LNLYEEGESP ETVEMERGDL
201: YFIRYKIVKR AIESGQIDLI

Arabidopsis Description

SLD5DNA replication complex GINS protein SLD5 [Source:UniProtKB/TrEMBL;Acc:A0A178UAX9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.