Factsheet for Os05t0143400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18994	Sorghum	nucleus	90.0	92.09
TraesCS3D01G400700.1	Wheat	cytosol	90.45	91.71
TraesCS3B01G439200.1	Wheat	cytosol	90.45	91.71
TraesCS3A01G405500.1	Wheat	cytosol	90.45	91.71
HORVU3Hr1G090890.3	Barley	nucleus	62.27	87.26
GSMUA_Achr5P21600_001	Banana	cytosol	72.73	73.39
Zm00001d006788_P001	Maize	nucleus	63.64	73.3
VIT_05s0077g00120.t01	Wine grape	cytosol	57.27	69.23
VIT_05s0077g00800.t01	Wine grape	nucleus	68.18	68.18
PGSC0003DMT400018952	Potato	nucleus	60.0	59.19
Solyc11g065900.1.1	Tomato	nucleus	60.0	59.19
Zm00001d024805_P001	Maize	cytosol	34.55	58.91
KRH44169	Soybean	nucleus	57.27	55.75
CDX85387	Canola	nucleus	54.55	54.79
CDX86259	Canola	nucleus	53.64	53.88
Bra037442.1-P	Field mustard	nucleus	53.64	53.88
KRH47145	Soybean	cytosol	51.82	53.27
AT5G49010.1	Thale cress	cytosol	53.18	53.18
Zm00001d010541_P001	Maize	cytosol	35.91	50.97
VIT_05s0077g00290.t01	Wine grape	cytosol	17.73	40.21

Protein Annotations

Gene3D:1.20.58.1030	MapMan:13.2.2.5.4	EntrezGene:4337776	UniProt:A0A0P0WHT3	ProteinID:BAS92218.1	InterPro:GINS_A
InterPro:GINS_Sld5	InterPro:GINS_bundle-like_dom_sf	GO:GO:0000727	GO:GO:0000811	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139
GO:GO:0006259	GO:GO:0006260	GO:GO:0006261	GO:GO:0006270	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0031298
GO:GO:0032508	GO:GO:0043138	EnsemblPlantsGene:Os05g0143400	EnsemblPlants:Os05t0143400-01	PFAM:PF05916	PFAM:PF16922
PIRSF:PIRSF007764	PANTHER:PTHR21206	InterPro:SLD5_C	SUPFAM:SSF158573	SUPFAM:SSF160059	InterPro:Sld5_GINS_A
UniParc:UPI0001C7D4BC	RefSeq:XP_015637809.1	SEG:seg	:	:	:

Description

Similar to SLD5. (Os05t0143400-01)

Coordinates

chr5:+:2506263..2509289

Molecular Weight (calculated)

25019.6 Da

IEP (calculated)

4.257

GRAVY (calculated)

-0.312

Length

220 amino acids

Sequence
(BLAST)

001: MSSWEDDDSA AAAAAAAAAS TDVELLKRAW RNEKASPEIL RFDSPLVSRV REQIQLLEET LDDFGESGVD DLVVSLYQMD LDRTLFLLRS YLRLRLQKIE
101: KYMMHISKSE DLLSRLSQQE QRFAKSCTEM MEKHLEQSVL SKLPYGYDSV TRQSLSSTED DMVPEPQLDT FVFCKTKSDV GAFQLDDIGE EVVDLVADDL
201: YVLRYKSIKG LVESGQIDLI

Best Arabidopsis Sequence Match ( AT5G49010.1 )
(BLAST)

001: MASNSEAGGS ADYETLMSTS DVELLKRAWR NEKAAPEILQ YEGALVDRAK EQIELVEETI EDYVENGIDP LVVSLYQMDL DRAQFLLRSY LRVRLLKIEK
101: FMFHNLNSEE AERRLSEQEK VFATRCADDL AKHFEETVLL KLPENYQSVL KQSLISEVDD MVPQPHLDTF VVCRSKNFVS LNLYEEGESP ETVEMERGDL
201: YFIRYKIVKR AIESGQIDLI

Arabidopsis Description

SLD5DNA replication complex GINS protein SLD5 [Source:UniProtKB/TrEMBL;Acc:A0A178UAX9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.