Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES18994 | Sorghum | nucleus | 63.57 | 38.14 |
| Os05t0143400-01 | Rice | nucleus | 58.91 | 34.55 |
| TraesCS3A01G405500.1 | Wheat | cytosol | 56.59 | 33.64 |
| TraesCS3B01G439200.1 | Wheat | cytosol | 56.59 | 33.64 |
| TraesCS3D01G400700.1 | Wheat | cytosol | 56.59 | 33.64 |
| VIT_05s0077g00290.t01 | Wine grape | cytosol | 23.26 | 30.93 |
| GSMUA_Achr5P21600_001 | Banana | cytosol | 48.84 | 28.9 |
| HORVU3Hr1G090890.3 | Barley | nucleus | 33.33 | 27.39 |
| PGSC0003DMT400018952 | Potato | nucleus | 47.29 | 27.35 |
| Solyc11g065900.1.1 | Tomato | nucleus | 47.29 | 27.35 |
| VIT_05s0077g00800.t01 | Wine grape | nucleus | 46.51 | 27.27 |
| Zm00001d006788_P001 | Maize | nucleus | 37.21 | 25.13 |
| KRH44169 | Soybean | nucleus | 41.09 | 23.45 |
| AT5G49010.1 | Thale cress | cytosol | 37.21 | 21.82 |
| VIT_05s0077g00120.t01 | Wine grape | cytosol | 30.23 | 21.43 |
| Bra037442.1-P | Field mustard | nucleus | 35.66 | 21.0 |
| CDX86259 | Canola | nucleus | 35.66 | 21.0 |
| Zm00001d010541_P001 | Maize | cytosol | 24.81 | 20.65 |
| KRH47145 | Soybean | cytosol | 34.11 | 20.56 |
| CDX85387 | Canola | nucleus | 34.88 | 20.55 |
Protein Annotations
| Gene3D:1.20.58.1030 | Gene3D:3.40.5.60 | MapMan:35.2 | UniProt:A0A1D6J1W6 | ProteinID:AQK42042.1 | InterPro:GINS_Sld5 |
| InterPro:GINS_bundle-like_dom_sf | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006261 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | PFAM:PF16922 | PIRSF:PIRSF007764 | InterPro:SLD5_C | SUPFAM:SSF158573 |
| SUPFAM:SSF160059 | UniParc:UPI0008435D97 | EnsemblPlantsGene:Zm00001d024805 | EnsemblPlants:Zm00001d024805_P001 | EnsemblPlants:Zm00001d024805_T001 | SEG:seg |
Description
DNA replication protein-related
Coordinates
chr10:+:88769388..88769984
Molecular Weight (calculated)
14951.7 Da
IEP (calculated)
4.982
GRAVY (calculated)
-0.420
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSWDDDDDS AAAAAATDVE LLKRAWRDEK AAPEILRFDL PLVSRVREQI QLLVRSSPYP SLQCRSLSWT PSSSARPRAT GEEVVDLVAD DLYVLRYKSI
101: KGLVESNRID LVWCQWRWRR EPILFESWK
101: KGLVESNRID LVWCQWRWRR EPILFESWK
001: MASNSEAGGS ADYETLMSTS DVELLKRAWR NEKAAPEILQ YEGALVDRAK EQIELVEETI EDYVENGIDP LVVSLYQMDL DRAQFLLRSY LRVRLLKIEK
101: FMFHNLNSEE AERRLSEQEK VFATRCADDL AKHFEETVLL KLPENYQSVL KQSLISEVDD MGTSLNLITL DHNLSWLRLF AIISEHSLHS S
101: FMFHNLNSEE AERRLSEQEK VFATRCADDL AKHFEETVLL KLPENYQSVL KQSLISEVDD MGTSLNLITL DHNLSWLRLF AIISEHSLHS S
Arabidopsis Description
SLD5DNA replication complex GINS protein SLD5 [Source:UniProtKB/TrEMBL;Acc:A0A178UAX9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.