CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44169	Soybean	nucleus	92.52	87.61
PGSC0003DMT400018952	Potato	nucleus	59.81	57.4
Solyc11g065900.1.1	Tomato	nucleus	59.35	56.95
AT5G49010.1	Thale cress	cytosol	57.48	55.91
VIT_05s0077g00800.t01	Wine grape	nucleus	57.48	55.91
CDX85387	Canola	nucleus	57.01	55.71
Bra037442.1-P	Field mustard	nucleus	56.54	55.25
CDX86259	Canola	nucleus	56.54	55.25
GSMUA_Achr5P21600_001	Banana	cytosol	56.07	55.05
HORVU3Hr1G090890.3	Barley	nucleus	40.19	54.78
EES18994	Sorghum	nucleus	53.74	53.49
Os05t0143400-01	Rice	nucleus	53.27	51.82
VIT_05s0077g00120.t01	Wine grape	cytosol	43.93	51.65
TraesCS3A01G405500.1	Wheat	cytosol	52.34	51.61
TraesCS3D01G400700.1	Wheat	cytosol	52.34	51.61
TraesCS3B01G439200.1	Wheat	cytosol	51.87	51.15
Zm00001d006788_P001	Maize	nucleus	45.33	50.79
VIT_05s0077g00290.t01	Wine grape	cytosol	20.56	45.36
Zm00001d010541_P001	Maize	cytosol	26.17	36.13
Zm00001d024805_P001	Maize	cytosol	20.56	34.11

Protein Annotations

Gene3D:1.20.58.1030	EntrezGene:100814216	MapMan:13.2.2.5.4	EMBL:ACUP02004137	InterPro:GINS_A	InterPro:GINS_Sld5
InterPro:GINS_bundle-like_dom_sf	EnsemblPlantsGene:GLYMA_07G011200	GO:GO:0000727	GO:GO:0000811	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139
GO:GO:0006259	GO:GO:0006260	GO:GO:0006261	GO:GO:0006270	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0031298
GO:GO:0032508	GO:GO:0043138	UniProt:K7KYZ1	EnsemblPlants:KRH47145	ProteinID:KRH47145	ProteinID:KRH47145.1
PFAM:PF05916	PFAM:PF16922	PIRSF:PIRSF007764	PANTHER:PTHR21206	InterPro:SLD5_C	SUPFAM:SSF158573
SUPFAM:SSF160059	InterPro:Sld5_GINS_A	UniParc:UPI000294E09A	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:847783..850968

Molecular Weight (calculated)

24722.5 Da

IEP (calculated)

4.698

GRAVY (calculated)

-0.475

Length

214 amino acids

Sequence
(BLAST)

001: MASNSAAEGV SMGDDYEALI ATTDAELLKR AWRNEKAAPE ILRYESDLVS RVKKVIQFLE ETVEEKSSGG TNPLSVSLYQ MDLDRTLFLL RSYLRIRIQK
101: IEKFVFHIQK TEELWNRLSK DEKDFAKACE NDLKQHLDES VLLKLPKDYK SVLRQSSMSE EDDMVPEPQL DTFVLCRSKE YLTGIQLEDG PVDDRSKLFE
201: MEPGVLHFIC YKSI

Best Arabidopsis Sequence Match ( AT5G49010.1 )
(BLAST)

001: MASNSEAGGS ADYETLMSTS DVELLKRAWR NEKAAPEILQ YEGALVDRAK EQIELVEETI EDYVENGIDP LVVSLYQMDL DRAQFLLRSY LRVRLLKIEK
101: FMFHNLNSEE AERRLSEQEK VFATRCADDL AKHFEETVLL KLPENYQSVL KQSLISEVDD MVPQPHLDTF VVCRSKNFVS LNLYEEGESP ETVEMERGDL
201: YFIRYKIVKR AIESGQIDLI

Arabidopsis Description

SLD5DNA replication complex GINS protein SLD5 [Source:UniProtKB/TrEMBL;Acc:A0A178UAX9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.