Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G090890.3 | Barley | nucleus | 67.02 | 81.53 |
| EES18994 | Sorghum | nucleus | 77.49 | 68.84 |
| Os05t0143400-01 | Rice | nucleus | 73.3 | 63.64 |
| TraesCS3A01G405500.1 | Wheat | cytosol | 71.73 | 63.13 |
| TraesCS3B01G439200.1 | Wheat | cytosol | 71.73 | 63.13 |
| TraesCS3D01G400700.1 | Wheat | cytosol | 71.73 | 63.13 |
| Zm00001d010541_P001 | Maize | cytosol | 44.5 | 54.84 |
| GSMUA_Achr5P21600_001 | Banana | cytosol | 56.02 | 49.08 |
| VIT_05s0077g00800.t01 | Wine grape | nucleus | 53.4 | 46.36 |
| KRH47145 | Soybean | cytosol | 50.79 | 45.33 |
| KRH44169 | Soybean | nucleus | 52.88 | 44.69 |
| PGSC0003DMT400018952 | Potato | nucleus | 51.83 | 44.39 |
| Solyc11g065900.1.1 | Tomato | nucleus | 51.83 | 44.39 |
| VIT_05s0077g00120.t01 | Wine grape | cytosol | 41.88 | 43.96 |
| Bra037442.1-P | Field mustard | nucleus | 47.12 | 41.1 |
| CDX86259 | Canola | nucleus | 47.12 | 41.1 |
| CDX85387 | Canola | nucleus | 47.12 | 41.1 |
| AT5G49010.1 | Thale cress | cytosol | 47.12 | 40.91 |
| VIT_05s0077g00290.t01 | Wine grape | cytosol | 20.42 | 40.21 |
| Zm00001d024805_P001 | Maize | cytosol | 25.13 | 37.21 |
Protein Annotations
| Gene3D:1.20.58.1030 | MapMan:13.2.2.5.4 | UniProt:A0A1D6F0Q3 | InterPro:GINS_A | InterPro:GINS_Sld5 | InterPro:GINS_bundle-like_dom_sf |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006260 | GO:GO:0006261 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| ProteinID:ONM25078.1 | PFAM:PF05916 | PIRSF:PIRSF007764 | PANTHER:PTHR21206 | SUPFAM:SSF158573 | InterPro:Sld5_GINS_A |
| UniParc:UPI0008457F74 | EnsemblPlantsGene:Zm00001d006788 | EnsemblPlants:Zm00001d006788_P001 | EnsemblPlants:Zm00001d006788_T001 | SEG:seg | : |
Description
DNA replication protein-related
Coordinates
chr2:+:216679787..216681518
Molecular Weight (calculated)
21756.5 Da
IEP (calculated)
4.842
GRAVY (calculated)
-0.601
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSWDADDSA AASAAEAATT DVELLKRAWR NEKAAPEILR FDSPLVSRVR EQTQLLVRPP SRRPPPPSCY FSGSDADSLP RCRQEETLDD FADSGVDDLV
101: VSLYQMDLDR TLFLLRSYLR LRLQKIEKYT MHISRSEDLL SRLSQQERRF AKSCAEIMEK HLEQSVLSKL PYGYDSVSRQ SLSSTEDDMG T
101: VSLYQMDLDR TLFLLRSYLR LRLQKIEKYT MHISRSEDLL SRLSQQERRF AKSCAEIMEK HLEQSVLSKL PYGYDSVSRQ SLSSTEDDMG T
001: MASNSEAGGS ADYETLMSTS DVELLKRAWR NEKAAPEILQ YEGALVDRAK EQIELVEETI EDYVENGIDP LVVSLYQMDL DRAQFLLRSY LRVRLLKIEK
101: FMFHNLNSEE AERRLSEQEK VFATRCADDL AKHFEETVLL KLPENYQSVL KQSLISEVDD MGTSLNLITL DHNLSWLRLF AIISEHSLHS S
101: FMFHNLNSEE AERRLSEQEK VFATRCADDL AKHFEETVLL KLPENYQSVL KQSLISEVDD MGTSLNLITL DHNLSWLRLF AIISEHSLHS S
Arabidopsis Description
SLD5DNA replication complex GINS protein SLD5 [Source:UniProtKB/TrEMBL;Acc:A0A178UAX9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.