Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86259 | Canola | nucleus | 98.17 | 98.17 |
| AT5G49010.1 | Thale cress | cytosol | 83.56 | 83.18 |
| VIT_05s0077g00800.t01 | Wine grape | nucleus | 60.73 | 60.45 |
| HORVU3Hr1G090890.3 | Barley | nucleus | 42.92 | 59.87 |
| VIT_05s0077g00120.t01 | Wine grape | cytosol | 47.95 | 57.69 |
| KRH44169 | Soybean | nucleus | 59.36 | 57.52 |
| KRH47145 | Soybean | cytosol | 55.71 | 57.01 |
| TraesCS3A01G405500.1 | Wheat | cytosol | 55.71 | 56.22 |
| TraesCS3D01G400700.1 | Wheat | cytosol | 55.71 | 56.22 |
| TraesCS3B01G439200.1 | Wheat | cytosol | 55.25 | 55.76 |
| GSMUA_Achr5P21600_001 | Banana | cytosol | 54.34 | 54.59 |
| Os05t0143400-01 | Rice | nucleus | 54.79 | 54.55 |
| EES18994 | Sorghum | nucleus | 52.97 | 53.95 |
| PGSC0003DMT400018952 | Potato | nucleus | 52.97 | 52.02 |
| Solyc11g065900.1.1 | Tomato | nucleus | 52.51 | 51.57 |
| Zm00001d006788_P001 | Maize | nucleus | 41.1 | 47.12 |
| VIT_05s0077g00290.t01 | Wine grape | cytosol | 18.26 | 41.24 |
| Zm00001d010541_P001 | Maize | cytosol | 25.11 | 35.48 |
| Zm00001d024805_P001 | Maize | cytosol | 20.55 | 34.88 |
Protein Annotations
| Gene3D:1.20.58.1030 | MapMan:13.2.2.5.4 | GO:A0A078D8E8 | EnsemblPlants:CDX85387 | ProteinID:CDX85387 | ProteinID:CDX85387.1 |
| ncoils:Coil | InterPro:GINS_A | InterPro:GINS_Sld5 | InterPro:GINS_bundle-like_dom_sf | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006261 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00143066001 |
| PFAM:PF05916 | PFAM:PF16922 | PIRSF:PIRSF007764 | PANTHER:PTHR21206 | InterPro:SLD5_C | SUPFAM:SSF158573 |
| SUPFAM:SSF160059 | InterPro:Sld5_GINS_A | UniParc:UPI0004EDD127 | : | : | : |
Description
BnaC07g26980D
Coordinates
chrLK031841:+:1503469..1504738
Molecular Weight (calculated)
25335.1 Da
IEP (calculated)
4.543
GRAVY (calculated)
-0.445
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSDMGSA DFESLSSTSD VELLKRAWRN EKAAPEILPY EGDLVERAKG QIELVEENIE AYVENGIDPL VVSLYQMDLD RTQFLLRSYL RVRLLKIEKF
101: MFHSLKSEEA ESRLSEQEKV FARRCADDLA KHFEESVLRK LPENYQSVLK QSLISEVDDM VPEPHLDTFV VCRNKSHFTL NLYEDGESTQ TEEMYRGDLY
201: FIRYKIVKGA IESGKMDLI
101: MFHSLKSEEA ESRLSEQEKV FARRCADDLA KHFEESVLRK LPENYQSVLK QSLISEVDDM VPEPHLDTFV VCRNKSHFTL NLYEDGESTQ TEEMYRGDLY
201: FIRYKIVKGA IESGKMDLI
001: MASNSEAGGS ADYETLMSTS DVELLKRAWR NEKAAPEILQ YEGALVDRAK EQIELVEETI EDYVENGIDP LVVSLYQMDL DRAQFLLRSY LRVRLLKIEK
101: FMFHNLNSEE AERRLSEQEK VFATRCADDL AKHFEETVLL KLPENYQSVL KQSLISEVDD MVPQPHLDTF VVCRSKNFVS LNLYEEGESP ETVEMERGDL
201: YFIRYKIVKR AIESGQIDLI
101: FMFHNLNSEE AERRLSEQEK VFATRCADDL AKHFEETVLL KLPENYQSVL KQSLISEVDD MVPQPHLDTF VVCRSKNFVS LNLYEEGESP ETVEMERGDL
201: YFIRYKIVKR AIESGQIDLI
Arabidopsis Description
SLD5DNA replication complex GINS protein SLD5 [Source:UniProtKB/TrEMBL;Acc:A0A178UAX9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.