CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0143400-01	Rice	nucleus	92.09	90.0
TraesCS3B01G439200.1	Wheat	cytosol	90.7	89.86
TraesCS3D01G400700.1	Wheat	cytosol	89.77	88.94
TraesCS3A01G405500.1	Wheat	cytosol	89.77	88.94
HORVU3Hr1G090890.3	Barley	nucleus	61.4	84.08
Zm00001d006788_P001	Maize	nucleus	68.84	77.49
GSMUA_Achr5P21600_001	Banana	cytosol	72.09	71.1
VIT_05s0077g00120.t01	Wine grape	cytosol	55.81	65.93
VIT_05s0077g00800.t01	Wine grape	nucleus	66.98	65.45
Zm00001d024805_P001	Maize	cytosol	38.14	63.57
Solyc11g065900.1.1	Tomato	nucleus	61.4	59.19
PGSC0003DMT400018952	Potato	nucleus	61.4	59.19
KRH44169	Soybean	nucleus	58.6	55.75
Zm00001d010541_P001	Maize	cytosol	40.0	55.48
KRH47145	Soybean	cytosol	53.49	53.74
CDX85387	Canola	nucleus	53.95	52.97
CDX86259	Canola	nucleus	53.02	52.05
Bra037442.1-P	Field mustard	nucleus	53.02	52.05
AT5G49010.1	Thale cress	cytosol	53.02	51.82
VIT_05s0077g00290.t01	Wine grape	cytosol	18.6	41.24

Protein Annotations

Gene3D:1.20.58.1030	MapMan:13.2.2.5.4	UniProt:C5YZN7	ncoils:Coil	EnsemblPlants:EES18994	ProteinID:EES18994
ProteinID:EES18994.2	InterPro:GINS_A	InterPro:GINS_Sld5	InterPro:GINS_bundle-like_dom_sf	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006261
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	PFAM:PF05916	PFAM:PF16922
PIRSF:PIRSF007764	PANTHER:PTHR21206	InterPro:SLD5_C	EnsemblPlantsGene:SORBI_3009G038800	SUPFAM:SSF158573	SUPFAM:SSF160059
unigene:Sbi.20351	InterPro:Sld5_GINS_A	UniParc:UPI00081AE116	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:+:3621354..3625010

Molecular Weight (calculated)

24698.2 Da

IEP (calculated)

4.301

GRAVY (calculated)

-0.353

Length

215 amino acids

Sequence
(BLAST)

001: MSSWDDDDDT AAAAATDVEL LKRAWRNEKA APEILRFDSP LVSRVREQIQ LLEETLDDFA DSGVDDLVVS LYQMDLDRTL FLLRSYLRLR LQKIEKYTMH
101: ISRSDDLLSR LSQQERRFAK SCAEIMEKHL EQSVLSKLPY GYDSVTRQSL SSTEDDMVPE PQLDTFVFCK TKSDVGAFQL DDIGEEVVDL VADDLYVLRY
201: KSIKGLVESS RIDLI

Best Arabidopsis Sequence Match ( AT5G49010.1 )
(BLAST)

001: MASNSEAGGS ADYETLMSTS DVELLKRAWR NEKAAPEILQ YEGALVDRAK EQIELVEETI EDYVENGIDP LVVSLYQMDL DRAQFLLRSY LRVRLLKIEK
101: FMFHNLNSEE AERRLSEQEK VFATRCADDL AKHFEETVLL KLPENYQSVL KQSLISEVDD MVPQPHLDTF VVCRSKNFVS LNLYEEGESP ETVEMERGDL
201: YFIRYKIVKR AIESGQIDLI

Arabidopsis Description

SLD5DNA replication complex GINS protein SLD5 [Source:UniProtKB/TrEMBL;Acc:A0A178UAX9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.