Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G090890.3 | Barley | nucleus | 48.39 | 47.77 |
| Zm00001d006788_P001 | Maize | nucleus | 54.84 | 44.5 |
| EES18994 | Sorghum | nucleus | 55.48 | 40.0 |
| TraesCS3B01G439200.1 | Wheat | cytosol | 50.32 | 35.94 |
| Os05t0143400-01 | Rice | nucleus | 50.97 | 35.91 |
| TraesCS3D01G400700.1 | Wheat | cytosol | 49.03 | 35.02 |
| TraesCS3A01G405500.1 | Wheat | cytosol | 49.03 | 35.02 |
| VIT_05s0077g00290.t01 | Wine grape | cytosol | 19.35 | 30.93 |
| GSMUA_Achr5P21600_001 | Banana | cytosol | 41.94 | 29.82 |
| VIT_05s0077g00800.t01 | Wine grape | nucleus | 40.65 | 28.64 |
| PGSC0003DMT400018952 | Potato | nucleus | 38.71 | 26.91 |
| Solyc11g065900.1.1 | Tomato | nucleus | 38.71 | 26.91 |
| KRH47145 | Soybean | cytosol | 36.13 | 26.17 |
| KRH44169 | Soybean | nucleus | 37.42 | 25.66 |
| CDX85387 | Canola | nucleus | 35.48 | 25.11 |
| AT5G49010.1 | Thale cress | cytosol | 35.48 | 25.0 |
| Zm00001d024805_P001 | Maize | cytosol | 20.65 | 24.81 |
| VIT_05s0077g00120.t01 | Wine grape | cytosol | 29.03 | 24.73 |
| CDX86259 | Canola | nucleus | 34.84 | 24.66 |
| Bra037442.1-P | Field mustard | nucleus | 34.84 | 24.66 |
Protein Annotations
| EnsemblPlants:Zm00001d010541_P001 | EnsemblPlants:Zm00001d010541_T001 | EnsemblPlantsGene:Zm00001d010541 | Gene3D:1.20.58.1030 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006261 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:GINS_Sld5 |
| InterPro:GINS_bundle-like_dom_sf | PIRSF:PIRSF007764 | ProteinID:AQK94289.1 | SEG:seg | SUPFAM:SSF158573 | UniParc:UPI000220A5B6 |
| UniProt:A0A1D6FRS7 | MapMan:13.2.2.5.4 | : | : | : | : |
Description
DNA replication protein-related
Coordinates
chr8:+:119783637..119784307
Molecular Weight (calculated)
17543.7 Da
IEP (calculated)
4.151
GRAVY (calculated)
-0.090
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPDFELEFE MVGVLRAYKT TWDDGDSAAE AAATDVDLLK RAWLNEKAAS DILSFDSPLA LRVRDSGSDR GSLSWGRVTQ EEALDDFIDD GVDDLVVSLY
101: QMDLDRTLFL LRSYLLLEKI KKYTMHISRF DDLLSHLSQQ ERLVGAFITI VCATL
101: QMDLDRTLFL LRSYLLLEKI KKYTMHISRF DDLLSHLSQQ ERLVGAFITI VCATL
001: MASNSEAGGS ADYETLMSTS DVELLKRAWR NEKAAPEILQ YEGALVDRAK EQIELVEETI EDYVENGIDP LVVSLYQMDL DRAQFLLRSY LRVRLLKIEK
101: FMFHNLNSEE AERRLSEQEK VFATRCADDL AKHFEETVLL KLPENYQSVL KQSLISEVDD MVPQPHLDTF VVCRSKNFVS LNLYEEGESP ETVEMERGDL
201: YFIRYKIVKR AIESGQIDLI
101: FMFHNLNSEE AERRLSEQEK VFATRCADDL AKHFEETVLL KLPENYQSVL KQSLISEVDD MVPQPHLDTF VVCRSKNFVS LNLYEEGESP ETVEMERGDL
201: YFIRYKIVKR AIESGQIDLI
Arabidopsis Description
SLD5DNA replication complex GINS protein SLD5 [Source:UniProtKB/TrEMBL;Acc:A0A178UAX9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.