Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G405500.1 | Wheat | cytosol | 99.54 | 99.54 |
| TraesCS3B01G439200.1 | Wheat | cytosol | 98.62 | 98.62 |
| HORVU3Hr1G090890.3 | Barley | nucleus | 69.59 | 96.18 |
| Os05t0143400-01 | Rice | nucleus | 91.71 | 90.45 |
| EES18994 | Sorghum | nucleus | 88.94 | 89.77 |
| GSMUA_Achr5P21600_001 | Banana | cytosol | 73.27 | 72.94 |
| Zm00001d006788_P001 | Maize | nucleus | 63.13 | 71.73 |
| VIT_05s0077g00800.t01 | Wine grape | nucleus | 69.12 | 68.18 |
| VIT_05s0077g00120.t01 | Wine grape | cytosol | 56.68 | 67.58 |
| PGSC0003DMT400018952 | Potato | nucleus | 61.75 | 60.09 |
| Solyc11g065900.1.1 | Tomato | nucleus | 61.75 | 60.09 |
| Zm00001d024805_P001 | Maize | cytosol | 33.64 | 56.59 |
| CDX85387 | Canola | nucleus | 56.22 | 55.71 |
| KRH44169 | Soybean | nucleus | 57.14 | 54.87 |
| CDX86259 | Canola | nucleus | 55.3 | 54.79 |
| Bra037442.1-P | Field mustard | nucleus | 55.3 | 54.79 |
| AT5G49010.1 | Thale cress | cytosol | 55.3 | 54.55 |
| KRH47145 | Soybean | cytosol | 51.61 | 52.34 |
| Zm00001d010541_P001 | Maize | cytosol | 35.02 | 49.03 |
| VIT_05s0077g00290.t01 | Wine grape | cytosol | 19.82 | 44.33 |
Protein Annotations
| Gene3D:1.20.58.1030 | MapMan:13.2.2.5.4 | ncoils:Coil | InterPro:GINS_A | InterPro:GINS_Sld5 | InterPro:GINS_bundle-like_dom_sf |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006261 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | PFAM:PF05916 | PFAM:PF16922 | PIRSF:PIRSF007764 | PANTHER:PTHR21206 | InterPro:SLD5_C |
| SUPFAM:SSF158573 | SUPFAM:SSF160059 | InterPro:Sld5_GINS_A | EnsemblPlantsGene:TraesCS3D01G400700 | EnsemblPlants:TraesCS3D01G400700.1 | TIGR:cd11711 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:-:515677012..515679808
Molecular Weight (calculated)
24751.2 Da
IEP (calculated)
4.302
GRAVY (calculated)
-0.339
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSWEDEDSA AASAAATTDV ELLKRAWRNE KAAPEILHFD SALVSRAREQ IQLLEETLDD FTDNGVDDLV VSLYQMDLDR TLFLLRSYLR LRLQKIEKYM
101: SHIANSEDLL SRLSQQEQRF AKSCKEIMEK HLEQSVLSKL PYGYDSVTRQ SLSSTEDDMV PEPQLDTFVF CKTKSDVGAF QLDDVGEEVV DLVADDLYVL
201: RYKSIKGLVE AGRIDLI
101: SHIANSEDLL SRLSQQEQRF AKSCKEIMEK HLEQSVLSKL PYGYDSVTRQ SLSSTEDDMV PEPQLDTFVF CKTKSDVGAF QLDDVGEEVV DLVADDLYVL
201: RYKSIKGLVE AGRIDLI
001: MASNSEAGGS ADYETLMSTS DVELLKRAWR NEKAAPEILQ YEGALVDRAK EQIELVEETI EDYVENGIDP LVVSLYQMDL DRAQFLLRSY LRVRLLKIEK
101: FMFHNLNSEE AERRLSEQEK VFATRCADDL AKHFEETVLL KLPENYQSVL KQSLISEVDD MVPQPHLDTF VVCRSKNFVS LNLYEEGESP ETVEMERGDL
201: YFIRYKIVKR AIESGQIDLI
101: FMFHNLNSEE AERRLSEQEK VFATRCADDL AKHFEETVLL KLPENYQSVL KQSLISEVDD MVPQPHLDTF VVCRSKNFVS LNLYEEGESP ETVEMERGDL
201: YFIRYKIVKR AIESGQIDLI
Arabidopsis Description
SLD5DNA replication complex GINS protein SLD5 [Source:UniProtKB/TrEMBL;Acc:A0A178UAX9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.