Factsheet for AT5G49010.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85387	Canola	nucleus	83.18	83.56
CDX86259	Canola	nucleus	83.18	83.56
Bra037442.1-P	Field mustard	nucleus	83.18	83.56
VIT_05s0077g00800.t01	Wine grape	nucleus	61.36	61.36
HORVU3Hr1G090890.3	Barley	nucleus	41.82	58.6
VIT_05s0077g00120.t01	Wine grape	cytosol	48.18	58.24
KRH47145	Soybean	cytosol	55.91	57.48
KRH44169	Soybean	nucleus	58.64	57.08
PGSC0003DMT400018952	Potato	nucleus	56.82	56.05
Solyc11g065900.1.1	Tomato	nucleus	56.36	55.61
TraesCS3A01G405500.1	Wheat	cytosol	54.55	55.3
TraesCS3D01G400700.1	Wheat	cytosol	54.55	55.3
TraesCS3B01G439200.1	Wheat	cytosol	54.09	54.84
GSMUA_Achr5P21600_001	Banana	cytosol	54.09	54.59
Os05t0143400-01	Rice	nucleus	53.18	53.18
EES18994	Sorghum	nucleus	51.82	53.02
Zm00001d006788_P001	Maize	nucleus	40.91	47.12
VIT_05s0077g00290.t01	Wine grape	cytosol	19.09	43.3
Zm00001d024805_P001	Maize	cytosol	21.82	37.21
Zm00001d010541_P001	Maize	cytosol	25.0	35.48

Protein Annotations

Gene3D:1.20.58.1030	MapMan:13.2.2.5.4	EntrezGene:834960	UniProt:A0A178UAX9	ProteinID:AED95756.1	EMBL:AK221044
ArrayExpress:AT5G49010	EnsemblPlantsGene:AT5G49010	RefSeq:AT5G49010	TAIR:AT5G49010	RefSeq:AT5G49010-TAIR-G	EnsemblPlants:AT5G49010.1
TAIR:AT5G49010.1	EMBL:BT010406	ncoils:Coil	InterPro:GINS_A	InterPro:GINS_Sld5	InterPro:GINS_bundle-like_dom_sf
GO:GO:0000727	GO:GO:0000811	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139
GO:GO:0006259	GO:GO:0006260	GO:GO:0006261	GO:GO:0006270	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0031298
GO:GO:0032508	GO:GO:0043138	RefSeq:NP_199712.2	ProteinID:OAO90820.1	PFAM:PF05916	PFAM:PF16922
PIRSF:PIRSF007764	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293
PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PANTHER:PTHR21206	UniProt:Q6NQP5
Symbol:SLD5	InterPro:SLD5_C	SUPFAM:SSF158573	SUPFAM:SSF160059	InterPro:Sld5_GINS_A	UniParc:UPI0000197098

Description

SLD5DNA replication complex GINS protein SLD5 [Source:UniProtKB/TrEMBL;Acc:A0A178UAX9]

Coordinates

chr5:+:19866231..19868877

Molecular Weight (calculated)

25466.3 Da

IEP (calculated)

4.361

GRAVY (calculated)

-0.385

Length

220 amino acids

Sequence
(BLAST)

001: MASNSEAGGS ADYETLMSTS DVELLKRAWR NEKAAPEILQ YEGALVDRAK EQIELVEETI EDYVENGIDP LVVSLYQMDL DRAQFLLRSY LRVRLLKIEK
101: FMFHNLNSEE AERRLSEQEK VFATRCADDL AKHFEETVLL KLPENYQSVL KQSLISEVDD MVPQPHLDTF VVCRSKNFVS LNLYEEGESP ETVEMERGDL
201: YFIRYKIVKR AIESGQIDLI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.