Factsheet for PGSC0003DMT400057744

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

peroxisome 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g078940.2.1	Tomato	extracellular	98.15	98.15
VIT_00s0301g00170.t01	Wine grape	cytosol	78.15	79.62
GSMUA_Achr4P15790_001	Banana	cytosol	78.15	78.15
VIT_00s0301g00180.t01	Wine grape	cytosol	77.54	77.54
KRH10765	Soybean	cytosol, peroxisome, plastid	77.23	77.23
TraesCS6D01G358100.1	Wheat	peroxisome	76.0	75.54
OQU85913	Sorghum	cytosol	75.08	74.39
TraesCS6B01G411600.1	Wheat	peroxisome	74.77	74.31
TraesCS6A01G373900.1	Wheat	golgi	74.77	74.31
Bra013540.1-P	Field mustard	cytosol	74.15	74.15
TraesCS6D01G358200.1	Wheat	cytosol	74.15	73.7
CDX82839	Canola	cytosol	73.54	73.54
AT4G21580.1	Thale cress	cytosol	72.92	72.92
TraesCS6B01G411700.1	Wheat	cytosol	73.23	72.78
Os02t0805600-01	Rice	plasma membrane	72.92	72.26
Zm00001d018418_P002	Maize	cytosol	74.15	70.88
Zm00001d051987_P001	Maize	cytosol	66.15	70.26
CDX79076	Canola	cytosol, peroxisome, plastid	42.77	69.15
TraesCS6A01G374000.1	Wheat	cytosol	68.62	69.04
HORVU6Hr1G088160.7	Barley	cytosol, mitochondrion, peroxisome	73.23	68.19
VIT_14s0036g00560.t01	Wine grape	cytosol	27.69	56.6
VIT_09s0002g07840.t01	Wine grape	cytosol	48.31	54.33
VIT_09s0002g07690.t01	Wine grape	cytosol	30.15	54.14
VIT_09s0002g07580.t01	Wine grape	peroxisome	48.31	50.32
VIT_09s0002g07620.t01	Wine grape	cytosol	44.31	48.81
VIT_09s0002g07760.t01	Wine grape	cytosol	33.54	42.08
VIT_09s0070g00550.t01	Wine grape	cytosol	19.38	40.13
PGSC0003DMT400055608	Potato	cytosol, peroxisome, plastid	29.85	29.66
PGSC0003DMT400022514	Potato	cytosol	28.31	27.88
PGSC0003DMT400044065	Potato	cytosol	28.31	27.71
PGSC0003DMT400062565	Potato	cytosol, peroxisome, plastid	27.08	26.75
PGSC0003DMT400044064	Potato	cytosol	26.46	26.14
PGSC0003DMT400079606	Potato	cytosol	28.31	23.71
PGSC0003DMT400039777	Potato	mitochondrion	22.46	19.89
PGSC0003DMT400090732	Potato	plastid	11.08	16.36

Protein Annotations

EntrezGene:102583953	Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:50.1.3	ProteinID:ABA40459	ProteinID:ABA40459.1
InterPro:ADH_C	InterPro:ADH_N	EMBL:DQ191658	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	InterPro:GroES-like_sf	UniProt:M1C1K7	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107
PFAM:PF08240	EnsemblPlantsGene:PGSC0003DMG400022418	PGSC:PGSC0003DMG400022418	EnsemblPlants:PGSC0003DMT400057744	InterPro:PKS_ER	PANTHER:PTHR43006
PANTHER:PTHR43006:SF7	InterPro:Quinone_OxRdtase_PIG3	SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735	TIGRFAMs:TIGR02824
UniParc:UPI0002953212	RefSeq:XP_006347103.1	:	:	:	:

Description

NADPH quinone oxidoreductase [Source:PGSC_GENE;Acc:PGSC0003DMG400022418]

Coordinates

chr2:+:34586067..34590593

Molecular Weight (calculated)

34657.1 Da

IEP (calculated)

7.725

GRAVY (calculated)

0.058

Length

325 amino acids

Sequence
(BLAST)

001: MKAVVITIPG GPEVLKLQEV EDPQIKDDEI LIKIAATALN RADTLQRQGK YPPPKGDSEY PGLECSGTVE AVGKDVTRWK IGDQVCALIG GGGYAEKVAV
101: PTGQVLPIPS GVSLQDAASF PEVACTVWST IFMTSKLSSG ETFLIHGGSS GIGTFAIQMA KCLGVKVFIT AGSEEKLAAC KELGADVCIN YKTEDFVTRI
201: KEETGGKGVD VILDNIGGSY FQRNLDSLNV DGRLFIIGFM GGTVTQVNLG CLLARRLTVQ AAGLRSRSTK NKAQIVREVE KNVWPAIAAG KVKPVVYKYF
301: PLAEAAEAHQ LMESSKHIGK ILLTV

Best Arabidopsis Sequence Match ( AT4G21580.1 )
(BLAST)

001: MKAIVISEPG KPEVLQLRDV ADPEVKDDEV LIRVLATALN RADTLQRLGL YNPPPGSSPY LGLECSGTIE SVGKGVSRWK VGDQVCALLS GGGYAEKVSV
101: PAGQIFPIPA GISLKDAAAF PEVACTVWST VFMMGRLSVG ESFLIHGGSS GIGTFAIQIA KHLGVRVFVT AGSDEKLAAC KELGADVCIN YKTEDFVAKV
201: KAETDGKGVD VILDCIGAPY LQKNLDSLNF DGRLCIIGLM GGANAEIKLS SLLPKRLTVL GAALRPRSPE NKAVVVREVE KNVWPAIEAG KVKPVIYKYL
301: PLSQAAEGHS LMESSNHIGK ILLET

Arabidopsis Description

AT4g21580/F18E5_200 [Source:UniProtKB/TrEMBL;Acc:O65423]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.