Factsheet for PGSC0003DMT400090732

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0372700-01	Rice	plasma membrane	29.09	49.61
PGSC0003DMT400062565	Potato	cytosol, peroxisome, plastid	46.82	31.31
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plastid	36.36	30.19
TraesCS3B01G548400.1	Wheat	cytosol, peroxisome, plastid	29.55	29.82
GSMUA_Achr6P27730_001	Banana	cytosol	33.64	29.25
PGSC0003DMT400044064	Potato	cytosol	43.18	28.88
TraesCS2A01G277700.1	Wheat	plastid	29.09	28.32
AT4G13010.1	Thale cress	cytosol	40.91	27.36
PGSC0003DMT400022514	Potato	cytosol	40.91	27.27
PGSC0003DMT400044065	Potato	cytosol	40.0	26.51
GSMUA_Achr2P06100_001	Banana	mitochondrion	28.64	25.71
Bra001207.1-P	Field mustard	cytosol	38.18	25.53
CDY34537	Canola	cytosol	38.18	25.53
CDX80695	Canola	cytosol	38.18	25.53
GSMUA_Achr11P...	Banana	plasma membrane	36.36	24.24
VIT_07s0151g00260.t01	Wine grape	cytosol	36.36	23.67
KRH23756	Soybean	endoplasmic reticulum	35.0	23.48
TraesCS2A01G277900.1	Wheat	golgi	35.45	23.28
TraesCS2B01G295300.1	Wheat	golgi	35.0	22.99
EES10573	Sorghum	plastid	35.91	22.97
TraesCS5D01G287700.1	Wheat	golgi	35.0	22.92
TraesCS5B01G279900.1	Wheat	golgi	35.0	22.92
TraesCS5A01G280800.1	Wheat	cytosol, peroxisome, plastid	35.0	22.92
TraesCS2D01G276900.1	Wheat	plastid	34.55	22.69
OQU89739	Sorghum	cytosol	35.0	22.58
VIT_07s0151g00090.t01	Wine grape	mitochondrion	39.09	22.45
GSMUA_Achr2P06110_001	Banana	mitochondrion	33.18	21.92
Zm00001d021025_P001	Maize	mitochondrion, peroxisome, plastid	34.09	21.68
KRH44933	Soybean	cytosol, peroxisome	29.09	21.48
Zm00001d025166_P001	Maize	plastid	35.91	21.41
Os09t0503100-01	Rice	plasma membrane	33.64	21.39
TraesCS3D01G494500.1	Wheat	cytosol, peroxisome, plastid	31.82	21.28
TraesCS5D01G524500.1	Wheat	mitochondrion, peroxisome, plastid	32.73	21.18
Os09t0502500-01	Rice	plasma membrane	32.73	21.18
HORVU5Hr1G034150.2	Barley	nucleus	32.27	21.07
TraesCS2D01G276600.1	Wheat	cytosol, mitochondrion, plastid	30.45	20.62
TraesCS2B01G295100.1	Wheat	plastid	30.45	20.62
TraesCS2B01G295200.1	Wheat	plastid	30.45	20.36
TraesCS5A01G014100.1	Wheat	plastid	30.91	20.24
TraesCS7B01G043400.1	Wheat	cytosol, peroxisome, plastid	30.91	20.24
TraesCS5B01G279700.1	Wheat	plastid	31.36	20.23
Os04t0359100-01	Rice	plasma membrane	30.45	20.18
EER97004	Sorghum	cytosol, peroxisome, plastid	30.45	19.65
TraesCS2D01G276700.1	Wheat	mitochondrion	29.55	19.64
OQU83589	Sorghum	cytosol	28.18	19.56
Zm00001d006069_P001	Maize	peroxisome	32.73	19.35
Zm00001d042260_P002	Maize	mitochondrion	32.73	19.35
TraesCS7D01G143400.1	Wheat	cytosol	27.27	19.29
TraesCS5A01G280700.1	Wheat	plastid	30.0	19.24
TraesCS5D01G287300.2	Wheat	plastid	30.91	18.48
Os04t0358000-01	Rice	endoplasmic reticulum	25.0	17.35
Os04t0359700-00	Rice	cytosol, mitochondrion, peroxisome, plastid	26.82	16.34
PGSC0003DMT400079606	Potato	cytosol	21.36	12.11
PGSC0003DMT400057744	Potato	cytosol	16.36	11.08
VIT_07s0151g00200.t01	Wine grape	cytosol, mitochondrion, plastid	12.27	10.89
TraesCS7A01G142200.1	Wheat	cytosol, peroxisome, plastid	14.09	10.76
PGSC0003DMT400039777	Potato	mitochondrion	17.27	10.35
PGSC0003DMT400055608	Potato	cytosol, peroxisome, plastid	14.55	9.79
Os09t0503000-01	Rice	cytosol, mitochondrion, plastid	5.0	6.71

Protein Annotations

EnsemblPlants:PGSC0003DMT400090732	EnsemblPlantsGene:PGSC0003DMG400040303	Gene3D:3.90.180.10	GO:GO:0008150	GO:GO:0008152	GO:GO:0055114
InterPro:ADH_N	InterPro:GroES-like_sf	PANTHER:PTHR44013	PANTHER:PTHR44013:SF3	PFAM:PF08240	PGSC:PGSC0003DMG400040303
SEG:seg	SUPFAM:SSF50129	UniParc:UPI000295BB5E	UniProt:M1DL22	MapMan:35.1	:

Description

Quinone-oxidoreductase homolog, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400040303]

Coordinates

chr9:-:31602520..31607954

Molecular Weight (calculated)

24470.8 Da

IEP (calculated)

9.540

GRAVY (calculated)

-0.110

Length

220 amino acids

Sequence
(BLAST)

001: MCAPIDTLYA TADSHVFIPI LSSSLDCFAP IYERLEIVES YMAGKVMHAV QYNSYGSGAA GLKHVEVHVP TPKKDEVLLK LEATRIIPID WKIQKGMLRP
101: LLPTKFPFIS TIDVRGEVVE VGSNVKSFKA DEKVVAMLNV FEVLVEAWIL RRKTEQIGLK RTRNGIYRLP SLTLRVTKMT QTAIHSSTRS LEGSGSKGEE
201: RSSQRVGESP ISSAKQYCTT

Best Arabidopsis Sequence Match ( AT4G13010.1 )
(BLAST)

001: MAGKLMHALQ YNSYGGGAAG LEHVQVPVPT PKSNEVCLKL EATSLNPVDW KIQKGMIRPF LPRKFPCIPA TDVAGEVVEV GSGVKNFKAG DKVVAVLSHL
101: GGGGLAEFAV ATEKLTVKRP QEVGAAEAAA LPVAGLTALQ ALTNPAGLKL DGTGKKANIL VTAASGGVGH YAVQLAKLAN AHVTATCGAR NIEFVKSLGA
201: DEVLDYKTPE GAALKSPSGK KYDAVVHCAN GIPFSVFEPN LSENGKVIDI TPGPNAMWTY AVKKITMSKK QLVPLLLIPK AENLEFMVNL VKEGKVKTVI
301: DSKHPLSKAE DAWAKSIDGH ATGKIIVEP

Arabidopsis Description

CEQORHChloroplast envelope quinone oxidoreductase homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SV68]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.