CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 3
mitochondrion 2
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44933	Soybean	cytosol, peroxisome	82.93	91.28
PGSC0003DMT400044064	Potato	cytosol	73.78	73.56
Solyc09g059040.2.1	Tomato	plastid	72.26	72.04
PGSC0003DMT400062565	Potato	cytosol, peroxisome, plastid	71.95	71.73
Solyc09g059030.2.1	Tomato	plastid	71.65	71.43
Solyc09g059020.2.1	Tomato	cytosol, extracellular, peroxisome	59.15	70.8
KRG99627	Soybean	cytosol	68.6	68.39
KRH46629	Soybean	cytosol	67.38	67.17
PGSC0003DMT400022514	Potato	cytosol	66.46	66.06
TraesCS2A01G277700.1	Wheat	plastid	44.21	64.16
PGSC0003DMT400044065	Potato	cytosol	64.94	64.16
TraesCS2B01G295300.1	Wheat	golgi	64.94	63.58
TraesCS2A01G277900.1	Wheat	golgi	64.33	62.99
TraesCS2D01G276900.1	Wheat	plastid	64.02	62.69
TraesCS3B01G548400.1	Wheat	cytosol, peroxisome, plastid	40.55	61.01
TraesCS7D01G143400.1	Wheat	cytosol	57.62	60.77
OQU83589	Sorghum	cytosol	57.93	59.94
EES10573	Sorghum	plastid	62.5	59.59
TraesCS7B01G043400.1	Wheat	cytosol, peroxisome, plastid	60.98	59.52
TraesCS5D01G524500.1	Wheat	mitochondrion, peroxisome, plastid	61.59	59.41
TraesCS5B01G279900.1	Wheat	golgi	60.37	58.93
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plastid	47.56	58.87
TraesCS5D01G287700.1	Wheat	golgi	60.06	58.63
TraesCS5A01G280800.1	Wheat	cytosol, peroxisome, plastid	60.06	58.63
GSMUA_Achr6P27730_001	Banana	cytosol	45.12	58.5
GSMUA_Achr11P...	Banana	plasma membrane	58.84	58.48
OQU89739	Sorghum	cytosol	60.37	58.06
TraesCS5A01G014100.1	Wheat	plastid	59.45	58.04
TraesCS2B01G295100.1	Wheat	plastid	57.01	57.54
Os09t0502500-01	Rice	plasma membrane	59.15	57.06
Zm00001d021025_P001	Maize	mitochondrion, peroxisome, plastid	60.06	56.94
TraesCS2B01G295200.1	Wheat	plastid	57.01	56.84
TraesCS2D01G276700.1	Wheat	mitochondrion	57.32	56.8
GSMUA_Achr2P06100_001	Banana	mitochondrion	42.38	56.73
TraesCS2D01G276600.1	Wheat	cytosol, mitochondrion, plastid	56.1	56.62
TraesCS3D01G494500.1	Wheat	cytosol, peroxisome, plastid	56.4	56.23
Os09t0503100-01	Rice	plasma membrane	59.15	56.07
Os04t0372700-01	Rice	plasma membrane	21.95	55.81
GSMUA_Achr2P06110_001	Banana	mitochondrion	56.4	55.56
TraesCS7A01G142200.1	Wheat	cytosol, peroxisome, plastid	48.48	55.21
Zm00001d025166_P001	Maize	plastid	61.28	54.47
Os04t0358000-01	Rice	endoplasmic reticulum	52.13	53.94
TraesCS5B01G279700.1	Wheat	plastid	55.79	53.67
Os09t0503000-01	Rice	cytosol, mitochondrion, plastid	26.52	53.05
Os04t0359100-01	Rice	plasma membrane	53.35	52.71
TraesCS5A01G280700.1	Wheat	plastid	54.88	52.48
EER97004	Sorghum	cytosol, peroxisome, plastid	54.27	52.2
Zm00001d042260_P002	Maize	mitochondrion	57.01	50.27
Zm00001d006069_P001	Maize	peroxisome	56.4	49.73
TraesCS5D01G287300.2	Wheat	plastid	55.18	49.18
Os04t0359700-00	Rice	cytosol, mitochondrion, peroxisome, plastid	53.66	48.75
PGSC0003DMT400090732	Potato	plastid	23.48	35.0
KRH07194	Soybean	nucleus	33.23	34.17
KRG93309	Soybean	cytosol	30.79	31.56
KRG93311	Soybean	cytosol	30.79	31.37
KRG93306	Soybean	cytosol	30.49	31.06
KRG93310	Soybean	cytosol	29.57	30.31
KRH45668	Soybean	nucleus	34.15	28.21
KRG99340	Soybean	plastid	33.54	27.85
HORVU5Hr1G034150.2	Barley	nucleus	28.05	27.3
KRH10765	Soybean	cytosol, peroxisome, plastid	26.52	26.77
KRH27297	Soybean	mitochondrion	28.05	25.27
KRH36398	Soybean	cytosol	12.5	24.85
KRH22019	Soybean	mitochondrion	28.05	23.77
KRH56616	Soybean	cytosol	7.62	23.36
KRH53690	Soybean	cytosol, peroxisome, plasma membrane	24.39	23.05
KRH64241	Soybean	nucleus	24.09	22.83
KRH27530	Soybean	nucleus	25.61	22.34
KRG93308	Soybean	extracellular	11.28	20.9

Protein Annotations

EntrezGene:100790762	Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:35.1	EMBL:ACUP02007160	InterPro:ADH_N
EnsemblPlantsGene:GLYMA_12G002100	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	InterPro:GroES-like_sf	UniProt:I1LNP4	EnsemblPlants:KRH23756	ProteinID:KRH23756	ProteinID:KRH23756.1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF08240	PFAM:PF13602	InterPro:PKS_ER	PANTHER:PTHR44013	SMART:SM00829
SUPFAM:SSF50129	SUPFAM:SSF51735	UniParc:UPI000233D18E	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:-:157808..160349

Molecular Weight (calculated)

34834.0 Da

IEP (calculated)

8.440

GRAVY (calculated)

0.042

Length

328 amino acids

Sequence
(BLAST)

001: MNLMQAVRYD AYGGGPAGLK HVEVAVPSPK ANEVLIKLEA VSINPIDWKI QKGLLRPLFL PRTFPHIPCT DVAGEIVEIG TQVKDFKVGD QVLAKLTHQY
101: GGGFAEFAVA SESLTAARPS EVSAAEAAAL PIAGLTARDA LTQIAGVKLD GTGQLKNILV TAASGGVGHY AVQLAKLGNT HVTATCGARN IDFVKGLGAD
201: EVLDYRTPEG AALKSPSGRK YDAVINCTTG ISWSTFDPNL TEKAVVVDLT PNASSLWTAA MKKITFSKKQ LVPFFVNVQR EGLEYLLQLV KDGKLKSVID
301: SKFPLSKAED AWAKSIDGHA TGKIIVEP

Best Arabidopsis Sequence Match ( AT4G13010.1 )
(BLAST)

001: MAGKLMHALQ YNSYGGGAAG LEHVQVPVPT PKSNEVCLKL EATSLNPVDW KIQKGMIRPF LPRKFPCIPA TDVAGEVVEV GSGVKNFKAG DKVVAVLSHL
101: GGGGLAEFAV ATEKLTVKRP QEVGAAEAAA LPVAGLTALQ ALTNPAGLKL DGTGKKANIL VTAASGGVGH YAVQLAKLAN AHVTATCGAR NIEFVKSLGA
201: DEVLDYKTPE GAALKSPSGK KYDAVVHCAN GIPFSVFEPN LSENGKVIDI TPGPNAMWTY AVKKITMSKK QLVPLLLIPK AENLEFMVNL VKEGKVKTVI
301: DSKHPLSKAE DAWAKSIDGH ATGKIIVEP

Arabidopsis Description

CEQORHChloroplast envelope quinone oxidoreductase homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SV68]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.