CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99340	Soybean	plastid	94.46	94.94
HORVU6Hr1G025630.2	Barley	cytosol	52.9	80.46
VIT_01s0127g00740.t01	Wine grape	plastid	74.81	78.78
Solyc05g005480.2.1	Tomato	plastid	71.28	72.94
PGSC0003DMT400079606	Potato	cytosol	70.03	71.65
CDY61544	Canola	plastid	69.27	71.43
Bra024616.1-P	Field mustard	plastid	69.02	71.17
AT1G23740.1	Thale cress	plastid	68.77	70.73
CDY47631	Canola	plastid	68.26	70.39
KRG93309	Soybean	cytosol	56.68	70.31
TraesCS6D01G122800.1	Wheat	plastid	66.0	68.41
KRH07194	Soybean	nucleus	54.91	68.34
TraesCS6B01G161600.1	Wheat	plastid	65.24	67.62
KRG93311	Soybean	cytosol	54.66	67.39
TraesCS6A01G133100.1	Wheat	plastid	64.74	67.1
KRG93310	Soybean	cytosol	53.9	66.88
Zm00001d032332_P001	Maize	plastid	64.23	66.06
Os08t0379400-02	Rice	plastid	64.74	65.9
KRH56616	Soybean	cytosol	17.63	65.42
KRG93306	Soybean	cytosol	51.13	63.04
KXG25078	Sorghum	plastid	63.22	62.75
HORVU6Hr1G025730.2	Barley	plastid	65.24	61.23
KRG93308	Soybean	extracellular	22.17	49.72
KRH23756	Soybean	endoplasmic reticulum	28.21	34.15
KRG99627	Soybean	cytosol	27.2	32.83
KRH46629	Soybean	cytosol	26.95	32.52
KRH44933	Soybean	cytosol, peroxisome	23.93	31.88
KRH10765	Soybean	cytosol, peroxisome, plastid	22.67	27.69
KRH27297	Soybean	mitochondrion	25.19	27.47
KRH22019	Soybean	mitochondrion	24.69	25.32
KRH36398	Soybean	cytosol	10.33	24.85
KRH53690	Soybean	cytosol, peroxisome, plasma membrane	21.66	24.78
KRH27530	Soybean	nucleus	23.17	24.47
KRH64241	Soybean	nucleus	21.16	24.28

Protein Annotations

EntrezGene:100810816	Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:35.1	EMBL:ACUP02005275	InterPro:ADH_N
EnsemblPlantsGene:GLYMA_08G286800	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0016491	GO:GO:0055114	InterPro:GroES-like_sf	UniProt:I1KXG0	EnsemblPlants:KRH45668
ProteinID:KRH45668	ProteinID:KRH45668.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF08240	PFAM:PF13602	InterPro:PKS_ER
ScanProsite:PS01162	PANTHER:PTHR44573	InterPro:Quin_OxRdtase/zeta-crystal_CS	SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735
UniParc:UPI00023386F5	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:39695542..39699237

Molecular Weight (calculated)

42238.6 Da

IEP (calculated)

9.100

GRAVY (calculated)

-0.078

Length

397 amino acids

Sequence
(BLAST)

001: MQSMSLCASL SSTASHLTSL ASVSSSTSPL SRKFSLTFRE KNRTPIAPPH KLPFFSARPA PTRVVLVKSQ ATAPASSEAV KVTPVPSEMK AWVYGEYGGV
101: DVLKLDSNVA VPDVKEDQVL IKVVAAALNP VDAKRRQGKF KATDSPLPTV PGYDVAGVVV KVGSQVKDFK VGDEVYGDVN EKALEGPKQF GSLAEYTAVE
201: EKLLAPKPKN LDFAQAASLP LAIETAYEGL ERTGFSPGKS ILVLNGSGGV GSLVIQLAKQ VYGASRVAAT SSTRNLDLLK SLGADLAIDY TKENFEDLPE
301: KFDVVYDAIG QCDRAVKAVK EDGSVVALTG AVTPPGFRFV VTSNGEVLRK LNPYLESGKV KPIVDPKGPF PFDKLAEAFS YLETNRATGK VVIHPIP

Best Arabidopsis Sequence Match ( AT1G23740.1 )
(BLAST)

001: MNAALATTTA TTPVLRRETP LLHYCSLTTK SPVYQINRVR FGSCVQTVSK KFLKISASSQ SASAAVNVTA DASIPKEMKA WVYSDYGGVD VLKLESNIVV
101: PEIKEDQVLI KVVAAALNPV DAKRRQGKFK ATDSPLPTVP GYDVAGVVVK VGSAVKDLKE GDEVYANVSE KALEGPKQFG SLAEYTAVEE KLLALKPKNI
201: DFAQAAGLPL AIETADEGLV RTEFSAGKSI LVLNGAGGVG SLVIQLAKHV YGASKVAATA STEKLELVRS LGADLAIDYT KENIEDLPDK YDVVFDAIGM
301: CDKAVKVIKE GGKVVALTGA VTPPGFRFVV TSNGDVLKKL NPYIESGKVK PVVDPKGPFP FSRVADAFSY LETNHATGKV VVYPIP

Arabidopsis Description

AORNADPH-dependent alkenal/one oxidoreductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUC1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.