CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93309	Soybean	cytosol	72.73	72.5
KRG93311	Soybean	cytosol	73.04	72.36
KRH56616	Soybean	cytosol	23.51	70.09
KRG93306	Soybean	cytosol	70.22	69.57
KRG93310	Soybean	cytosol	69.28	69.06
GSMUA_Achr4P07780_001	Banana	cytosol	66.14	68.28
HORVU6Hr1G025630.2	Barley	cytosol	55.17	67.43
TraesCS6D01G122800.1	Wheat	plastid	66.46	55.35
KRH45668	Soybean	nucleus	68.34	54.91
TraesCS6B01G161600.1	Wheat	plastid	65.83	54.83
TraesCS6A01G133100.1	Wheat	plastid	65.83	54.83
KRG99340	Soybean	plastid	67.4	54.43
Os08t0379400-02	Rice	plastid	66.14	54.1
KRG93308	Soybean	extracellular	29.78	53.67
Zm00001d032332_P001	Maize	plastid	63.01	52.07
KXG25078	Sorghum	plastid	61.76	49.25
HORVU6Hr1G025730.2	Barley	plastid	64.89	48.94
KRH23756	Soybean	endoplasmic reticulum	34.17	33.23
KRH46629	Soybean	cytosol	34.17	33.13
KRG99627	Soybean	cytosol	33.86	32.83
KRH44933	Soybean	cytosol, peroxisome	29.78	31.88
KRH27297	Soybean	mitochondrion	30.72	26.92
KRH10765	Soybean	cytosol, peroxisome, plastid	27.27	26.77
KRH53690	Soybean	cytosol, peroxisome, plasma membrane	27.59	25.36
KRH64241	Soybean	nucleus	26.65	24.57
KRH22019	Soybean	mitochondrion	29.47	24.29
KRH36398	Soybean	cytosol	12.54	24.24
KRH27530	Soybean	nucleus	26.33	22.34

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:35.1	EMBL:ACUP02009947	InterPro:ADH_N	EnsemblPlantsGene:GLYMA_16G073600
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0016491	GO:GO:0055114	InterPro:GroES-like_sf	UniProt:I1MLW9	EnsemblPlants:KRH07194	ProteinID:KRH07194
ProteinID:KRH07194.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF08240	PFAM:PF13602	InterPro:PKS_ER	ScanProsite:PS01162
PANTHER:PTHR44573	InterPro:Quin_OxRdtase/zeta-crystal_CS	SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735	UniParc:UPI000233AD62
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:7433300..7436617

Molecular Weight (calculated)

34599.6 Da

IEP (calculated)

6.645

GRAVY (calculated)

-0.083

Length

319 amino acids

Sequence
(BLAST)

001: MAAISIPSHM KAWTYSEYGK SKEVLKFNQS VALPEVKEDQ VLIKVAAASL NPIDHKRMEG YFKNSDSPLP TAPGYDVAGV VVKVGSEVKK FKVGDEVYGD
101: INVKALEYPK VIGSLAEYTA AEERLLAHKP QNLSFAEAAS LPLTLETAYE GLERTGFSAG KSILVLGGAG GVGTHVIQLA KHVYGASKVA ATASTRKLEL
201: LRNLGADWPI DYTKENFEDL SEKFDVVYDT VGQTEQAFKV LKEGGKVVTI VPPGFHPAIL FILSTDGAIL EKLNPYFESG KLKPILDPKS PFPFSQTVEA
301: FAHLETNRAT GKIVVYPIP

Best Arabidopsis Sequence Match ( AT1G23740.1 )
(BLAST)

001: MNAALATTTA TTPVLRRETP LLHYCSLTTK SPVYQINRVR FGSCVQTVSK KFLKISASSQ SASAAVNVTA DASIPKEMKA WVYSDYGGVD VLKLESNIVV
101: PEIKEDQVLI KVVAAALNPV DAKRRQGKFK ATDSPLPTVP GYDVAGVVVK VGSAVKDLKE GDEVYANVSE KALEGPKQFG SLAEYTAVEE KLLALKPKNI
201: DFAQAAGLPL AIETADEGLV RTEFSAGKSI LVLNGAGGVG SLVIQLAKHV YGASKVAATA STEKLELVRS LGADLAIDYT KENIEDLPDK YDVVFDAIGM
301: CDKAVKVIKE GGKVVALTGA VTPPGFRFVV TSNGDVLKKL NPYIESGKVK PVVDPKGPFP FSRVADAFSY LETNHATGKV VVYPIP

Arabidopsis Description

AORNADPH-dependent alkenal/one oxidoreductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUC1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.