CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 3
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P15790_001	Banana	cytosol	77.85	77.85
VIT_00s0301g00170.t01	Wine grape	cytosol	76.31	77.74
PGSC0003DMT400057744	Potato	cytosol	77.23	77.23
Solyc02g078940.2.1	Tomato	extracellular	76.62	76.62
Bra013540.1-P	Field mustard	cytosol	76.31	76.31
CDX82839	Canola	cytosol	76.31	76.31
VIT_00s0301g00180.t01	Wine grape	cytosol	75.38	75.38
AT4G21580.1	Thale cress	cytosol	74.46	74.46
TraesCS6D01G358100.1	Wheat	peroxisome	73.85	73.39
TraesCS6B01G411600.1	Wheat	peroxisome	73.54	73.09
Os02t0805600-01	Rice	plasma membrane	73.54	72.87
TraesCS6A01G373900.1	Wheat	golgi	73.23	72.78
OQU85913	Sorghum	cytosol	72.92	72.26
CDX79076	Canola	cytosol, peroxisome, plastid	44.62	72.14
TraesCS6D01G358200.1	Wheat	cytosol	71.69	71.25
TraesCS6B01G411700.1	Wheat	cytosol	70.77	70.34
Zm00001d018418_P002	Maize	cytosol	72.31	69.12
Zm00001d051987_P001	Maize	cytosol	64.92	68.95
TraesCS6A01G374000.1	Wheat	cytosol	66.15	66.56
HORVU6Hr1G088160.7	Barley	cytosol, mitochondrion, peroxisome	70.46	65.62
VIT_09s0002g07690.t01	Wine grape	cytosol	32.0	57.46
VIT_14s0036g00560.t01	Wine grape	cytosol	26.77	54.72
VIT_09s0002g07840.t01	Wine grape	cytosol	48.0	53.98
VIT_09s0002g07620.t01	Wine grape	cytosol	45.54	50.17
VIT_09s0002g07580.t01	Wine grape	peroxisome	47.08	49.04
VIT_09s0002g07760.t01	Wine grape	cytosol	32.92	41.31
VIT_09s0070g00550.t01	Wine grape	cytosol	19.08	39.49
KRH46629	Soybean	cytosol	28.62	28.27
KRG99627	Soybean	cytosol	28.62	28.27
KRG93310	Soybean	cytosol	27.08	27.5
KRH07194	Soybean	nucleus	26.77	27.27
KRH27530	Soybean	nucleus	31.08	26.86
KRG93309	Soybean	cytosol	26.15	26.56
KRH23756	Soybean	endoplasmic reticulum	26.77	26.52
KRG93311	Soybean	cytosol	25.85	26.09
KRH64241	Soybean	nucleus	26.46	24.86
KRG93306	Soybean	cytosol	24.62	24.84
KRH53690	Soybean	cytosol, peroxisome, plasma membrane	26.15	24.5
KRH36398	Soybean	cytosol	12.0	23.64
KRH44933	Soybean	cytosol, peroxisome	21.54	23.49
KRH56616	Soybean	cytosol	7.69	23.36
KRH45668	Soybean	nucleus	27.69	22.67
KRH27297	Soybean	mitochondrion	25.23	22.53
KRG93308	Soybean	extracellular	12.0	22.03
KRG99340	Soybean	plastid	26.77	22.03
KRH22019	Soybean	mitochondrion	24.62	20.67

Protein Annotations

EntrezGene:100813682	Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:50.1.3	EMBL:ACUP02009157	InterPro:ADH_C
InterPro:ADH_N	EMBL:BT097415	UniProt:C6TID4	EnsemblPlantsGene:GLYMA_15G068300	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:GroES-like_sf	EnsemblPlants:KRH10765	ProteinID:KRH10765
ProteinID:KRH10765.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240	InterPro:PKS_ER	PANTHER:PTHR43006
PANTHER:PTHR43006:SF7	InterPro:Quinone_OxRdtase_PIG3	SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735	TIGRFAMs:TIGR02824
UniParc:UPI0001B16AFD	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:5213113..5215926

Molecular Weight (calculated)

34539.7 Da

IEP (calculated)

6.150

GRAVY (calculated)

0.079

Length

325 amino acids

Sequence
(BLAST)

001: MKAIVITRPG GPEVLQLEEV EDPLVGDDEL LIGVHATSLN RADTFQRKGS YPPPKGASPY LGLECSGTVL SLGKNVSSWK IGDQVCALLA GGGYAEKVAV
101: PVGQVLPVPA GVSLTDAASF PEVACTVWST VFMMSRLSQG ETLLVHGGSS GIGTFAIQIA KYRGSRVFVT AGSEEKLAFC KSIGADVGIN YKTEDFVARV
201: KEETGGQGVD VILDCMGASY YQRNLDSLNF DGRLFIIGFQ GGVSTQADLR PLLAKRLTVQ GAGLRNRSLE NKAVIVSEVE KNVWPAIAEG KVKPVVYKSF
301: PLSEAAEAHQ LMESSQHIGK ILLLP

Best Arabidopsis Sequence Match ( AT4G21580.1 )
(BLAST)

001: MKAIVISEPG KPEVLQLRDV ADPEVKDDEV LIRVLATALN RADTLQRLGL YNPPPGSSPY LGLECSGTIE SVGKGVSRWK VGDQVCALLS GGGYAEKVSV
101: PAGQIFPIPA GISLKDAAAF PEVACTVWST VFMMGRLSVG ESFLIHGGSS GIGTFAIQIA KHLGVRVFVT AGSDEKLAAC KELGADVCIN YKTEDFVAKV
201: KAETDGKGVD VILDCIGAPY LQKNLDSLNF DGRLCIIGLM GGANAEIKLS SLLPKRLTVL GAALRPRSPE NKAVVVREVE KNVWPAIEAG KVKPVIYKYL
301: PLSQAAEGHS LMESSNHIGK ILLET

Arabidopsis Description

AT4g21580/F18E5_200 [Source:UniProtKB/TrEMBL;Acc:O65423]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.